Conserved Protein Domain Family
PLDc_SMU_988_like_1

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cd09154: PLDc_SMU_988_like_1 
Putative catalytic domain, repeat 1, of Streptococcus mutans uncharacterized protein SMU_988 and similar proteins
Putative catalytic domain, repeat 1, of Streptococcus mutans uncharacterized protein SMU_988 and similar proteins. Although SMU_988 and similar proteins have not been functionally characterized, members in this subfamily show high sequence homology to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.
Statistics
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PSSM-Id: 197251
Aligned: 35 rows
Threshold Bit Score: 232.805
Created: 23-Mar-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activecatalytic site
Feature 1:putative active site [active site]
Evidence:
  • Comment:Based on similarity with phospholipase D, which functions as a bi-lobed monomer with two catalytic domains. Each domain carries one copy of the conserved HKD motif and two domains form a single active site.
  • Comment:The HKD signature motif (expanded to H-x-K-x(4)-D-x(6)-G-S-x-N, where x represents any amino acid residue) characterizes the PLD superfamily.
  • Comment:Most residues in the HKD motif are part of the active site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
P34001       104 FPNGQSKFEEMKKQLLKAEKFIFLEYFIIAEGLMWGEILSILEQKVqEGVEVRVMYDGMLELstLSFDYAKRLEKiGIKA 183 Streptococcus m...
NP_344739    116 FPNGEAMWKKMVEDLKKAEKFIFLEYYIIEEGLMWNRILDILEQKVaQGVEVKMLYDDIGCMatLTGDYAHRLRQlGIEA 195 Streptococcus p...
CBL18110     154 FPNGESFFPVYLEKLRTAKKFIFMEYFIINDGYLWQEVKKILTEKCrQGVEVRILYDDIATIskLTRSFRRELRNmGVQV 233 Ruminococcus sp...
CBK79874     150 FPLGEEMLEAMIEDLKKAEKCIFLEYFIISDGVIWKRVKEVLIEKAkAGIDIRLLIDDFGCLgiNTAEFRDELVKsGIRL 229 Coprococcus cat...
ZP_04449473  151 YAAGELALEPLLEALRSAERYILLEFFIMNPGLFMDQVFEVLAQKAdQGVEVRVIYDDFGCLttLPSDFVSQMEAiGIKC 230 Catonella morbi...
YP_001558447 160 YPMGEDTFKAIIKDIEEAKKFIMLNFFIVGEGILWDRIHDLLVRKIsEGVEVMFMYDDFGAMlrTPKNFRRILECeGFKV 239 Clostridium phy...
ZP_02094222  135 FASGEDSFEEYLNDLKTAEKFIFMEYFIISEGFFLDSVLNILKQKVkNGVDVKIIIDDIGSIltLSNKTLEEIRNlGIKV 214 Parvimonas micr...
CBL02921     156 FSCGEAMYPALLADLEKAEKSIFLEFFIISQGKMWQGVEDILRRKAaQGVDVRLIYDDFGSLlgLPKDFVVRMERaHIRC 235 Faecalibacteriu...
ZP_05792457  151 FPLGDDMFPVMLSELNKAEKFIFMEYFIIEDGLMLNSILDILKEKAsRGVDVRFMYDSLGSIakAPVDIVRDLRKaGIRC 230 Butyrivibrio cr...
ZP_05344547  164 YRTGQEFYQALLESLERAEQFIFMEYFIIESGSMWDPIYEVLQRKAaQGVEVCLMYDDIGCMgtLPSRYDRIVRRdGIRC 243 Bryantella form...
Feature 1                           # #            # #                #                      
P34001       184 KVFSPITPf-VSTYYNYRDHRKILVIDNKVAFNGGINLADEYINqieRFGYWKDTAVMLEGEGVASFTLMFLQMWS 258 Streptococcus mutans
NP_344739    196 HKFNKVIPr-LTVAYNNRDHRKILIVDGQIAYTGGVNLADEYINhveRFGYWKDSGIRLDGLAVKALTRLFLTTWY 270 Streptococcus pneum...
CBL18110     234 YPFNPYRAa-VDSFMNYRDHRKITVIDGVIGFTGGINLADEYINkieRFGYWKDAGLMLEGSAVQALTHTFLKSWG 308 Ruminococcus sp. 18P13
CBK79874     230 AVFAPIHKnvDRLSFNYRNHQKITIVDGNIGYCGGINLADEYANiiqRFGHWKDTALRLEGEGVWGLTSIFLEMWE 305 Coprococcus catus GD/7
ZP_04449473  231 LQFNPFTPv-ISLAVNNRDHRKIVVVDGKVGFTGGMNLADEYINeieRFGYWKDNLIRLEGPGVWSLATLFLDMWN 305 Catonella morbi ATC...
YP_001558447 240 QVFNPIHKytDKLYMNYRSHQKIIVVDGNIGYTGGMNLADEYINlvdRFGRWKDNAVRIEGDAVWGLTVTFLQMWE 315 Clostridium phytofe...
ZP_02094222  215 VEFNQVKGi-VLPKHNNRTHRKMTIIDGKIAYTGGINIADEYINlyeKYGYWKDSVLKLEGHAVASFINMFISLWD 289 Parvimonas micra AT...
CBL02921     236 IPFNPVVPl-LSLVMNHRDHRKIVVIDGKVAYTGGINLADEYINaitRFGYWKDAGLRIEGTAVWNFTVMFLDFWN 310 Faecalibacterium pr...
ZP_05792457  231 FEFNTFRSi-LDNRYNNRDHRKICVIDGNVGFTGGVNLADEYINvktVYGHWKDTAIMIKGDAVWSLTNMFLTLWD 305 Butyrivibrio crosso...
ZP_05344547  244 MVSNRFRPv-LSNVHNNRDHRKITVIDGNTGFTGGINLADEYINaveKFGYWKDTAVKLEGDAVGSLTALFLSFWN 318 Bryantella formatex...

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