Conserved Protein Domain Family
PLDc_unchar5

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cd09133: PLDc_unchar5 
Putative catalytic domain of uncharacterized hypothetical proteins with one or two copies of the HKD motif
Putative catalytic domain of uncharacterized hypothetical proteins with similarity to phospholipase D (PLD, EC 3.1.4.4). PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain one or two copies of the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily.
Statistics
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PSSM-Id: 197231
Aligned: 21 rows
Threshold Bit Score: 109.341
Created: 20-Apr-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activeputative
Feature 1:putative active site [active site]
Evidence:
  • Comment:Based on similarity with phospholipase D, which functions as a bi-lobed monomer with two catalytic domains. Each domain carries one copy of the conserved HKD motif and two domains form a single active site.
  • Comment:The HKD signature motif (expanded to H-x-K-x(4)-D-x(6)-G-S-x-N, where x represents any amino acid residue) characterizes the PLD superfamily.
  • Comment:Most residues in the HKD motif are part of the active site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
YP_533772    262 DHRDRLIEILRQAR-SRLIMHSTFLres-afIELQEEFGKAAK-RGVRIDIFWGadrdardrkanleaa-------iain 331 Rhodopseudomona...
YP_722229    328 EIRPEFLSTLKAAT-QQILIYSPWVteevvdEEFIQLLQKLAN-NGVWILMGYGiaekqeketqamsp---------kve 396 Trichodesmium e...
ZP_04581976   68 QHKDYLLYALEMAK-QAVYIHSPWVrhn-vvKEYEKHIESALQ-KGIKVSIKYGlkprnrfekapid-----------pe 133 Helicobacter bi...
YP_001802144 331 EIREYLLKALKEAK-NRVMIVSPWIkgnvvnQQFISTLEDSLK-RKVKVYIIYGikgssfqndnw--------------- 393 Cyanothece sp. ...
YP_001309282 206 EIRDKFIKAFSDAK-YELNIASPWMnnyvvnNNLINMMENLLS-RGGAIKIIYGieenssiyhikkdsnnrsknrnsdii 283 Clostridium bei...
ZP_03102533  307 DIRDKFLNSFTETK-RKMLMVSPWIsnhvvdREMLERLQKFAK-QNKTLYISWGiaknrnnedrlpsv---------ell 375 Bacillus cereus W
YP_001869320 323 QISQAFSEVLNSAK-SQVIIYSPWVnqavvdEKFLTLLQKLAN-RGVWILIGHGivrrqedeekpisp---------eve 391 Nostoc punctifo...
YP_002287054 441 ADHERLLRVAAHDA-QQRFVCCTNKv----gANMVPALFDPAEvAGRRLSDVRIyysrrsgpvkrg-------------h 502 Oligotropha car...
CAD31256     449 QMHEALLRHASGTAeKRFLIASDRLgna-afANAIIPAEHFHSrTGLTPVVVYSqnsgaiaeasa--------------- 512 Mesorhizobium l...
ZP_01000232  443 DHLPLLRRAAHVAK-ERLMVMTHRMgsp-miQNVFDPAQVASE-RIETVQALYSvpsgevkkrdv--------------r 505 Oceanicola bats...
Feature 1                               # #                   # #                 #       
YP_533772    332 hrittdqnlrGRARVHLYTTr-SHAKLLIADatgrgtgefVAVVGSCNWLYSg--------FNRVETSVVLRH 395 Rhodopseudomonas palus...
YP_722229    397 eklltirtpeDLPAAQIFWLgnSHAKEVLVDr-------kVHLSGSHNWLSYrg-----drGFRGETAYRVTN 457 Trichodesmium erythrae...
ZP_04581976  134 skmlfdkwdkSYPNFKANTDd-NHSKILICDd-------eFMIIGSFNWLSFggla-dkdgDIRGETSSVVKN 197 Helicobacter bilis ATC...
YP_001802144 394 sikklenlsdNYRNLKFEKTknSHRKQIVCDd-------kFAIVTSFNFLSFrad---pnlTYRDELGVVLRD 456 Cyanothece sp. ATCC 51142
YP_001309282 284 aerlkdkfkyYGGNFKIKKVn-SHNKLLICDe-------qYYMETSFNLLSFsgeydenskDIRDEGATYSTN 348 Clostridium beijerinck...
ZP_03102533  376 eqlrgikhadGTQAVFVRWFgnQHNKEIVVDs-------kYHLLGSFNWLSYrg-----dyDIRHESVVMVND 436 Bacillus cereus W
YP_001869320 392 kklraiktpdGLSSVQVLWLgdSHIKEVIVDr-------eIHLCGSHNWLSYhg-----dyLPRGESVYKVTI 452 Nostoc punctiforme PCC...
YP_002287054 503 vtkhrerlhgIVELIGVPEPq-LHAKFLVWDs-------nHIVVSSLNWGSQsgl----edNPLDEIGLYLEG 563 Oligotropha carboxidov...
CAD31256     513 amsvavealaRGVQVVSPTEs-FHAKFLLWGe-------dDVVITSLNMGSAtis----pdLPMGELGVHLSG 573 Mesorhizobium loti R7A
ZP_01000232  506 aagemagggiDLRRIQSKHAm-LHGKALLWDh-------dDIVVTSFNWGSQtas----edKPLDEIGLHLNG 566 Oceanicola batsensis H...

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