Conserved Protein Domain Family
PLDc_C_DEXD_like

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cd09126: PLDc_C_DEXD_like 
C-terminal putative phospholipase D-like domain of uncharacterized prokaryotic HKD family nucleases fused to DEAD/DEAH box helicases
C-terminal putative phospholipase D (PLD)-like domain of uncharacterized prokaryotic HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. In addition to the helicase-like region, members of this family also contain a PLD-like domain in the C-terminal region, which is characterized by a variant HKD (H-x-K-x(4)-D motif, where x represents any amino acid residue) motif. Due to the lack of key residues related to PLD activity in the variant HKD motif, members of this subfamily are most unlikely to carry PLD activity.
Statistics
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PSSM-Id: 197224
Aligned: 29 rows
Threshold Bit Score: 86.1568
Created: 17-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_03489621  850 QSIYDa--sNYYDMYSHDLmrAKKNIIVSSPSLsg--drVLEFTKLIKekmesGVEVTIVSWMpdkirfgssnyrmqlle 925  Eubacterium bi...
ZP_06408564  836 NQIFNg--sTFYRPYISDLikAKRSIVISSPKLyr--teQNPLVTLLKelaqqGIEILITTAAeneq-----------tv 900  Prevotella mel...
YP_001298817 829 QSIFSg--nNYLSPLVEDIaqARHTVIISVTKTgl--kkRSQLGIALKeamqrGVQVVVFVRNktee-----------ae 893  Bacteroides vu...
ZP_06290288  828 ELIYEr--nNYENAFRNDLanAKHSVLIAVPKVkf--kyRTAMMSTLSvilhnGVDVALRIKEegak-----------em 892  Prevotella tim...
YP_003574434 812 DLIYDg--qNFVQPFISDLtqCKRSIVISCPRVki--grNTQIAERLIdltanGIEIVLYTKEendd-----------tl 876  Prevotella rum...
YP_001272002 798 TAYYTk--dDYLPVWRQDLa-NAKKVFICLKRI------NQKQIEMLNem-vkFSQISLTLDKkqrn----------cdy 857  Lactobacillus ...
YP_001197829 772 QVLFSg--rDYEEKFREDLrnTRSTVYLQLHSFts--srIQELLGLLR-----GKQVVIHVSKnhkls--------ewlm 834  Streptococcus ...
ZP_02439156  698 NTMKFykekEGEWAFINDIitAKREIRIDIPDKpktslfITKLVKALKeakqrGIKVCIRAENrk--------------- 762  Clostridium sp...
ZP_04218140  646 LRWFMqmnlEETKVLLKDIlsAKQKIIISLPSTrq--vdKRVWQALMRt----EAQVTIYSDGp---------------- 703  Bacillus cereu...
NP_345089    425 QFVYVd--sRYEKVLREDLagERQECLLILPYVh-----QTKLMNFLKef--rISQIEICIPEtvank--------awld 487  Streptococcus ...
ZP_03489621  926 eMRQSGFYLKSAe-DNCEHFAIIDqEIVWYGNINLLg----KQDVEDHMMR--IQSKEIASELME 983  Eubacterium biforme DSM 3989
ZP_06408564  901 fIQSKGLSVKVKp-KLSLYTTIIDkEVVWYGSINTLg----YASKDDNMIK--VTDIHLANELIK 958  Prevotella melaninogenica D18
YP_001298817 894 wLQREGLTVRVSe-RLTFQLVMIDkKKMWYGSINYMg----YATEEECAVR--FSDEHLTAEMLD 951  Bacteroides vulgatus ATCC 8482
ZP_06290288  893 eLAKAGIDVLYNk-EQTLQCAIIDkAIVWYGNINFFd----YNTETSNIMR--IVDRKIANEMID 950  Prevotella timonensis CRIS 5C-B1
YP_003574434 877 rLLHQGMQIITId-RLSLHTAIIDkSIIWYGSVNILg----YHSIEDNLIR--FKNAEIATNLLA 934  Prevotella ruminicola 23
YP_001272002 858 kLLSNKVDFKLKe-KIGNNICVFDqKICWYGDLNFGg----NSYKNSSAIR--LVNTELAKKITS 915  Lactobacillus reuteri DSM 20016
YP_001197829 835 gLNSDNVKVKLVpeRIGTTAVILDsNLVWYGNLSPFt---yQSDDQASLLR--LESQSIATELLE 894  Streptococcus suis 05ZYH33
ZP_02439156  763 sLPRELMSLAIEntFVSNPLAIIDkKIVWYGIPSTQagfkeERVKYRPIIR--FKGANTASAIYG 825  Clostridium sp. SS2/1
ZP_04218140  704 -IPLKNVRVQRQ--NKSLPFVCIDdEIIWIGAPLTSqm-ifEGSPEFPYICarLQAPETIGVLKG 764  Bacillus cereus Rock3-44
NP_345089    488 qLKSQKIKVSFTqsKIVTPILLVNkTIVWYGAMPLL-----GKVDEMTILR--LESASIVSELVA 545  Streptococcus pneumoniae TIGR4
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