2F1N,2F2F,1SR4


Conserved Protein Domain Family
CdtB

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cd09081: CdtB 
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CdtB, the catalytic DNase I-like subunit of cytolethal distending toxin (CDT) protein
CDT is a secreted protein toxin produced by a number of Gram-negative disease-causing bacteria. CDT causes cell cycle arrest and eventual cell death in eukaryotic cells, as a result of chromosomal DNA damage caused by the catalytic, DNase I-like, CdtB subunit. Bacterial CDTs are generally comprised of three subunits, CdtA, -B and -C. CdtB is translocated into the host cell, where it acts as a genotoxin. CdtA and CdtC are needed for cell surface binding and cellular entry, and it is likely that they remain associated with the membrane, when CdtB is internalized. CdtB enters the target nucleus via nuclear translocation signal domain(s). This family belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.
Statistics
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PSSM-Id: 197315
Aligned: 14 rows
Threshold Bit Score: 240.377
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:putative catalytic site [active site]
Evidence:
  • Comment:based on other EEP superfamily members with structure; highly conserved in the EEP superfamily

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #                                  #                                        
2F1N_A        18 VATWNLQGAsat--tesKWNINVRQLISGenavdILAVQEAGSPPstavdtgr--------------------------- 68  Escherichia coli
2F2F_B        29 VATWNLQGSsav--nesKWNINVRQLLSGeqgadILMVQEAGSLPssavrtsr--------------------------- 79  Aggregatibacter...
1SR4_B         7 VATWNLQGSsav--nesKWNINVRQLLSGeqgadILMVQEAGSLPssavrtsr--------------------------- 57  Haemophilus duc...
NP_860978     23 VSTWNLQGSsan--tesKWNISVRQLITGdnpanILMVQEAGAIPasarrtgr--------------------------- 73  Helicobacter he...
ZP_04629858   28 LASWNMQGAqsgygsnsKWVTGVAGMLNIne-idIVALQETGAAPpsaivlpisagqhpeivrripranvkslitslagg 106 Yersinia bercov...
NP_456275     29 VMTWNLQGSsas--tesKWNVNVRQLLSGtagvdILMVQEAGAVPtsavptgrh-------------------------- 80  Salmonella ente...
ZP_04616986   22 LSTWNIQGAysgagsnsKWVTGIKCMFLLeg-iqIVAIQEAGARPpsaqptavpgtaggvplqr-------------lsg 87  Yersinia rucker...
YP_002924428  53 FGTWNTNGA--------RWNDVRNLMVNGqf--dVLAIQEAGALPtssrnegsvteshdynsivn-----------eaqr 111 APSE-2
ACJ10107      43 FATWNSHSA--------HWQEVLDFMIAGnl--dVLTIQEAGALPdevrpslgnaipydqtqpplqdlpecyignvpdgn 112 Bacteriophage A...
ACJ10134      13 AGSWNTQGA--------RWGDVRLLLNRNpq-mnIFLIQEAGQLPvgtlrtsapvdvc---------------------- 61  Bacteriophage A...
Feature 1                                                                                        
2F1N_A        69 --------vipspgiPVRELIWNLStns------rpQQVYIYFSAVDal----------ggRVNLALVSNrRADEVFVLS 124 Escherichia coli
2F2F_B        80 --------viqhggtPIEEYTWNLGtrs------rpNMVYIYYSRLDvg----------anRVNLAIVSRrQADEAFIVH 135 Aggregatibacter...
1SR4_B        58 --------viqhggtPIEEYTWNLGtrs------rpNMVYIYYSRLDvg----------anRVNLAIVSRrQADEAFIVH 113 Haemophilus duc...
NP_860978     74 --------mvqpggtPVEEFTWELGtys------rpNTVYIYYAPLDvg----------arRVNLAIVSDrRADEVLVVH 129 Helicobacter he...
ZP_04629858  107 sttkinpgsggvnpnMVKEFILNLGsst------rpRDFYIYQFDNGrtd--------aasRINLALVSRvRADEVLIIP 172 Yersinia bercov...
NP_456275     81 -------iqpfgvgiPIDEYTWNLGtts------rqDIRYIYHSAIDvg----------arRVNLAIVSRqRADNVYVLR 137 Salmonella ente...
ZP_04616986   88 gqhsstnpqrrgvisDIEESIWRPGge-------rgGQIYIYHLNNDir----------vhRLNIAIASRiRADEIIIVP 150 Yersinia rucker...
YP_002924428 112 lcyigeinqndvlfgTVREYSWQTSr---------gESFYLYYYDRRdhyvms--ngnqypRVNTAIITRqRADNIFFTA 180 APSE-2
ACJ10107     113 fdsssnyqsipgpalSVLEYVWRVNg----------HTFYIYYYDRRlrqelvlgqnapsaDQNTAIVTRqRAERLFLMT 182 Bacteriophage A...
ACJ10134      62 --fisaddeinefnpGVTENLWNALsgrpvrnesdpNAVFVYHYNRIvnvpnr---pqanpRTNIAIISRsRADEIFVIE 136 Bacteriophage A...
Feature 1                                                   #                                    
2F1N_A       125 PVr---------------------qGGRPLLGIRIgnDAFFTAHAIAmr---nnDAPALVEEVYNFFrdsrd-pvhqaLN 179 Escherichia coli
2F2F_B       136 SDss-------------------vlQSRPAVGIRIgtDVFFTVHALAtg---gsDAVSLIRNIFTTFtsspssperrgYS 193 Aggregatibacter...
1SR4_B       114 SDss-------------------vlQSRPAVGIRIgtDVFFTVHALAtg---gsDAVSLIRNIFTTFnsssspperrvYS 171 Haemophilus duc...
NP_860978    130 QNvva------------------teASRPAIGIRIgnDVFFNIHALAsg---ggDAPALVTAVHDNFinm------pqIN 182 Helicobacter he...
ZP_04629858  173 PMai-------------------gdNTRPTLGIRIgdDYFFTIHARAar---nnEAPQIIQFIDNYMtstvq-pnrpaAT 229 Yersinia bercov...
NP_456275    138 PTt---------------------vASRPVIGIGLgnDVFLTAHALAsg---gpDAAAIVRVTINFFrqpq----mrhLS 189 Salmonella ente...
ZP_04616986  151 PMea-------------------gaNVRPTLGIRInnDYFFNLHAGAhp---hnEASQIVRFIDSFMtndvl-pqrpeAS 207 Yersinia rucker...
YP_002924428 181 PIytnq---------------rrtnINRPIIGIRLenAVFFNVHAAPdrg-grnEAGSAVNIIRDYMamn-----spnHT 239 APSE-2
ACJ10107     183 PFdrr-----------------rysINRPVIGAQLedAVFFNLHAEPnni--rnEASAVVNIIQNYMann-----yptLT 238 Bacteriophage A...
ACJ10134     137 PLvaetleslsnnydqdsnhpagtwTRRPALGIRIgnNIYFTIHAASngsrahnEAPLLVSMIENFVshy-----ypnAT 211 Bacteriophage A...
Feature 1             # #                                             #                          
2F1N_A       180 WMILGDFNRePADLEMNLt----VPVRRa--SEIISpaAATQTs-----QRTLDYAVAgnsvaf----rpsplQAGIVYg 244 Escherichia coli
2F2F_B       194 WMVVGDFNRaPVNLEAALrq--ePAVSEn--TIIIAptEPTHRs-----GNILDYAILhdahlprreqareriGASLMLn 264 Aggregatibacter...
1SR4_B       172 WMVVGDFNRaPANLEVALrq--ePAVSEn--TIIIAptEPTHRs-----GNILDYAILhdahlprreqareriGASLMLn 242 Haemophilus duc...
NP_860978    183 WLIAGDFNRdPALLQSGL-----DTRIAn-hIRITApnSATHFssr-gtNRTLDYAVVgrsspsrstivlpqiAAILMAa 255 Helicobacter he...
ZP_04629858  230 WVVMGDYNRsSDELEASLkq-lkPQLTHp--YQIASpnRATHQs-----NGTIDYAVIgrlnqgg--avggmmTVPLIAa 299 Yersinia bercov...
NP_456275    190 WFLAGDFNRsPDRLENDL-----MTEHLervVAVLAptEPTQIg-----GGILDYGVIvd-----------raPYSQRVe 248 Salmonella ente...
ZP_04616986  208 WVIMGDFNQsPDSLRASLss--pSAGLTn-hYNVVGpvMRTHEs-----GHALDYAVFgvphgia--rlsaapPVSAMMt 277 Yersinia rucker...
YP_002924428 240 WAMIGDFNRiPSELNSEIlsstpPMQTF---IENVHtgESTHEspnpssSRELDYGVLggsas------hsdhHVSAIIa 310 APSE-2
ACJ10107     239 WAVTGDFNR-PNNTINFPt---sPANTF---THLLSsgQITHPspgtgrSEELDYGFWggpia------revsMASIILl 305 Bacteriophage A...
ACJ10134     212 ARIMGDFNSaPSHLEESLar--aPNSMP---MRILSppSGTQQs-----GNVLDYGIAlann-------nlniAAIVAGf 274 Bacteriophage A...
Feature 1                   ##       
2F1N_A       245 arr---tqisSDHFPVGVSR 261 Escherichia coli
2F2F_B       265 qlr---sqitSDHFPVSFVH 281 Aggregatibacter actinomycetemcomitans
1SR4_B       243 qlr---sqitSDHFPVSFVR 259 Haemophilus ducreyi
NP_860978    256 nir---ahlsSDHSPVHFGR 272 Helicobacter hepaticus ATCC 51449
ZP_04629858  300 ll-----tyaSDHMAVQYMH 314 Yersinia bercovieri ATCC 43970
NP_456275    249 alrn--pqlaSDHYPVAFLA 266 Salmonella enterica subsp. enterica serovar Typhi str. CT18
ZP_04616986  278 h--------iSDHVAVRFTV 289 Yersinia ruckeri ATCC 29473
YP_002924428 311 ly-----llqLSMNPSDHKP 325 APSE-2
ACJ10107     306 tdyiryqigrNIPNPSDHLP 325 Bacteriophage APSE-7
ACJ10134     275 lt-----irgVVPTTSDHFP 289 Bacteriophage APSE-6

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