6Q3V


Conserved Protein Domain Family
KH-I_N4BP1_like_rpt1

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cd09032: KH-I_N4BP1_like_rpt1 
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first type I K homology (KH) RNA-binding domain found in the family of NEDD4-binding protein 1 (N4BP1)
The N4BP1 family includes N4BP1, NYN domain and retroviral integrase catalytic domain-containing protein (NYNRIN) and KH and NYN domain-containing protein (KHNYN). These proteins are probably of retroviral origin. N4BP1 interacts with and is a substrate of NEDD4 ubiquitin ligase (neural precursor cell expressed, developmentally downregulated 4, E3 ubiquitin protein ligase). It is also an inhibitor of the E3 ubiquitin-protein ligase ITCH, a NEDD4 structurally related E3. N4BP1 acts by interacting with the second WW domain of ITCH, leading to compete with ITCH's substrates and impairing ubiquitination of substrates. NYNRIN, also known as CGIN1/Cousin of GIN1, may contribute to retroviral resistance in mammals by regulating the ubiquitination of viral proteins. KHNYN acts as a novel cofactor for zinc finger antiviral protein (ZAP) to target CpG-containing retroviral RNA for degradation. Members of this family contains two type I K homology (KH) RNA-binding domain. The model corresponds to the first one. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif.
Statistics
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PSSM-Id: 411808
Aligned: 37 rows
Threshold Bit Score: 64.2264
Created: 17-Aug-2010
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6Q3V_A          3 DEFTAPaeKAELLEQSRGRIEGLFGVSLAVLgalgae-----eplpaRIWLQLCGa----QEAVHSAKEYIKGIC 68   human
XP_002122846    6 DEFVVTasQAKQLTRKRDDIERKFSVLLKIPqee----------ndgMIWIRVRGn----IANVTSAKTYVKAIC 66   vase tunicate
XP_023933138    5 DEMIVNmdVVPTLNSVKDWIEHKFDVRLKLGliand------pdgsrKQWIEFIGslginQYDVKLAKEYSKSLC 73   Lingula anatina
ELU05229       18 DEIIIDanKKDLVEQNKFIIRERFAVNVSIGllt----------hdgKLWLDFHGe----AKQRKKAKNYVKTLC 78   Capitella teleta
Q9P2P1         12 EWFMVQtkSKPRVQRQRLQVQRIFRVKLNAFqsrp---------dtpYFWLQLEGp----RENMGKAKEYLKGLC 73   human
XP_002165851   10 DVFIKDs-SIDRVKLFAEHVKKLFFVELKFTsakgkq-----fmhmaGVWLEIQGq---eYENVVKAREYVKGLS 75   Hydra vulgaris
O15037         12 DRFAVSaeAENKVREQQPHVERIFSVGVSVLpkdc--------pdnpHIWLQLEGp----KENASRAKEYLKGLC 74   human
XP_003198902   16 DEFTCAgvLREAIRALQPTVERVFGVKLSIGaeesp-------sqggQIWLQLRGa----RTQVTAAKLFVKGVV 79   zebrafish
NP_001108289   18 DEFTVPqeSEREIRNQQSYMERIFGVTLNIIgvldqpplchrpmehlQMWLQMRGd----RRSIGKAKDYIKGLC 88   African clawed frog
XP_014352418   28 DEFAVSeeHQGSLMELRRRIEGLFGVEMKILgmlagga---pqeessQIWLQLQGa----PAHLKRAKEFIKGLC 95   coelacanth
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