3O0L


Conserved Protein Domain Family
DUF1425

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cd09030: DUF1425 
Click on image for an interactive view with Cn3D
Putative periplasmic lipoprotein
This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Statistics
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PSSM-Id: 176923
View PSSM: cd09030
Aligned: 72 rows
Threshold Bit Score: 59.2413
Threshold Setting Gi: 46202081
Created: 19-Nov-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
putative dimer
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:putative dimer interface [polypeptide binding site]
Evidence:
  • Structure:3O0L_A/B: Duf1425 family member Shew_1734 from Shewanella Sp. Pv-4 forms a homodimer, contacts at 4 A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #####       #               # # #                                               
3O0L_A         6 GIXISst---gEVRVDngs-----fhSDVDVSAVTTQaea-----gfLRARGTIISKspkdQRLQYKFTWYDiNGATVED 72  Shewanella loih...
ZP_03726957   42 TVTDQ------RIITDssla---ralAIVSVNQATVSgd-------lLQVQVTLENRkndpRTFRYKFDWIAaNGMQLDS 105 Opitutaceae bac...
YP_003657017  29 KISDDs-----HIVIDkalds-wlklEKLNYFQKSDGf---------WVVQARFKNTtymnRNVAYKIDWIDkNGFIVKT 93  Arcobacter nitr...
Q1PV57        34 GTKQVvt--dkRVITDat------lnKKVSIVGLNEAvtp----ggfLQLQIEILNRknsmQEFTYKIEWFDeNGMRVDT 101 Candidatus Kuen...
YP_001129682  21 SSKLNdr--raSIIDGsi------kgKIVLQELSSLIssd-----glMSVQVTGKNTtgkyRLLEYRMEWFGmDGMLVPT 87  Prosthecochlori...
ZP_03726405   70 YVSDQ------RVATDstlar-alrvVSVNQGFASGNl---------LQIQATIENLksgeRTYRYKLDWIDeNGMAAGG 133 Opitutaceae bac...
YP_374016     22 STRLEer--rvSFVDGslkgd-mlltDFVSVVNSSGL----------MEVQVTGRNKtsryRLLEYRVEWFEgSGLQVPS 88  Pelodictyon lut...
ZP_01736824   33 AAAIDr----eQLQIDpe------vnYFVAVTELLSQriaqpggealLQIQYAVEARs--nGDLAWKVTWFDpNGMVVKG 100 Marinobacter sp...
ZP_01895926   42 SVVFSdynlkrTWSGGlfgd---gerYRLSVVQHGQRata----tgtTEVYAVLRNHtdydYQIEARTQFFDqDGVPTDV 114 Marinobacter al...
ZP_00053804   53 EMPMN------SVNITdpniirklyvRSIAARRTQTGt---------VEVVAQVVNCtdfpLNAEARTQFYAnDGAASEP 117 Magnetospirillu...
Feature 1            #                          #####
3O0L_A        73 egVSWKSLKLHgkQQXQVTALSPN-ATAVRCELYVR 107 Shewanella loihica PV-4
ZP_03726957  106 t-GGWRVIHLRgrETSAISAVATS-PRAVDFRVKLE 139 Opitutaceae bacterium TAV2
YP_003657017  94 ilSKWKMATVEenRDFTINGVSPS-NQIKDFVIRVQ 128 Arcobacter nitrofigilis DSM 7299
Q1PV57       102 paSVWVPRQIEgqETLSITATAPK-QTARDFRVKFM 136 Candidatus Kuenenia stuttgartiensis
YP_001129682  88 vmTRWVKFPAFekSSFSFRAVAPK-AAVKDFRVIIR 122 Prosthecochloris vibrioformis DSM 265
ZP_03726405  134 --TGWRLLHLRgrEISTVSAIATT-PRVADFRLKFE 166 Opitutaceae bacterium TAV2
YP_374016     89 vmTRWTTCPAFekANFSFSAVAPK-PGVSDFRILIR 123 Pelodictyon luteolum DSM 273
ZP_01736824  101 vgEGYRKVSLLtgQTRYFTATAPH-ARVTDYQLHLR 135 Marinobacter sp. ELB17
ZP_01895926  115 k-PTWQRTTVPanSLSTYRELSTT-AQPLQYRVEVR 148 Marinobacter algicola DG893
ZP_00053804  118 v-SAWRRLILParTSNTYRELSLGdKSVDGYMIEMR 152 Magnetospirillum magnetotacticum MS-1

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