3NRE


Conserved Protein Domain Family
Aldose_epim_Ec_YphB

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cd09021: Aldose_epim_Ec_YphB 
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aldose 1-epimerase, similar to Escherichia coli YphB
Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Statistics
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PSSM-Id: 185698
Aligned: 31 rows
Threshold Bit Score: 218.703
Created: 2-Aug-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitecatalytic
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:3NRE_A; Escherichia coli K12 putative aldose 1-epimerase (B2544) binds diethylene glycol, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                 #                     
3NRE_A       12 LKLDVSDQGGVIEGFWRdt-----tPLLRPgkksgv--------atdasCFPLVPFANRVsgnRFVWQGREYQLqpnvew 78  Escherichia coli...
NP_519204    33 TMDIAPAAGGRIAALASvdadgrrtDWLAPmpasclrdgfdglawpkagCYPLLPFSNRIrggRFQWAGREVCLaphp-g 111 Ralstonia solana...
NP_435283    12 RLLARPDLGAGLTAFDVlhdg-vwqAIFRRvdpsta-------hpfalsNILLVPFSGRVsggGFTFDGTFHALprnvet 83  Sinorhizobium me...
YP_112070    16 SAVVLPRHGAGLASFDFlwrg-srlPAFRPlitepq-------hehdlaLYLLAPFSNRIgggGFAWNGRRHDLrpnveg 87  Burkholderia pse...
14026894     25 SLVVRPREGAAILRYDAlrpgraptPVLEPsrgl-----------lkfgSQLLIPWSNRIsggGFEFDGCFHAIepnveg 93  Mesorhizobium lo...
ZP_02188638  13 EAIVEPAFGGRITAFRHsg-----vDLFTPipdgdhdp----anagaggCFPLVPWSNRVrdgRMVAAGQVLALdkterg 83  alpha proteobact...
ZP_01103038  26 RLEISPREGAALVALQSrrgd-rwcDWLVDrelass--------tgtpaCFPLIPFANRIa-hGELEFSPQRLAanrpdl 95  Congregibacter l...
6458455      14 ELEILPDLGASILNLRSas----grPVLRPvdleqve------tssqcaCFTLLPFSNRIr-dARLTFGSEDVQlrvttk 82  Deinococcus radi...
NP_356457    18 SARFRSDWGGRMTHLVHae----mgDILAPtqadvfep----ynwpragAYPLVPYHNRVygaSFVESGKTHRLlphpal 89  Agrobacterium tu...
NP_825698    14 EVALVPGSGGRVRSLRVgg-----vELLRQger--------------ygCFPMVPWCGRIrdgKFRNGATLHQMplns-- 72  Streptomyces ave...
Feature 1            #                                                                      # # 
3NRE_A       79 dahYLHGdGWLGEWQCVShs---dDSLCLVYEhrsg---vyhyRVSQAFHLtadTLTVTLSVTNqgaetlpfGTGWHPYF 152 Escherichia coli...
NP_519204   112 qahAMHGvAHARAWQVDAlsa-ssAELSLRYVpvaeg-wpwpfVATQRLALtpeGLHAEMSLRNagdtpmpaGGGFHPYF 189 Ralstonia solana...
NP_435283    84 elyPIHGnGFSAAWDVASlsa-dlLTLTLSAEgpgp----fryDATMSYRLqgaGLLMELSLVNrarirlpyGAGFHPWF 158 Sinorhizobium me...
YP_112070    88 epcPLHGdAWQQHWTVMDqgr-thVTLQLLSRsipp----fayDAEITWTLdgpSLSGALTLIHrgedpmpyGGGFHPWL 162 Burkholderia pse...
14026894     94 epfPLHGdAFQRPWRLTRrtg-teMELVLEDGaigp----yryHASVRYALdegALSAVLAVENraairlpyGLGFHPWF 168 Mesorhizobium lo...
ZP_02188638  84 agnAIHGhGRRRAWSVTAdggptsVRMNYEHPagdeg-wpfayGADQIVSLsdeALSITLAVQNrskdempvGLGLHPYL 162 alpha proteobact...
ZP_01103038  96 sahPIHGyAWQAPWDLDWqkd-daLQLSYDGSddpw---pcqyRASMVFALapgELRITLKLSHrgvgempaGLGLHPAF 171 Congregibacter l...
6458455      83 dglTQHGdVRNRPWQVTRvtg-ahLRCTFDSRefpdfnwpwhlSAEVEYHLhgpHCDISVTLTNadarpmpaGMGLHPYF 161 Deinococcus radi...
NP_356457    90 tpdAMHGpAHRRPWHVASaae-drVTLQLNYEaddew--pfsfVAEQHFRLepdRLIVELSIINssdasapvSLGWHPYL 166 Agrobacterium tu...
NP_825698    73 pphAIHGtARDGAWRVARtgk-neAVLTYDLVepwp----ypgRVTQIAALtedSLTLTMSVEAydss-fpaQIGWHPWF 146 Streptomyces ave...
Feature 1                                                             #                         
3NRE_A      153 PLsp---qTRIQAqasgYWLERe--QWLAgefceqlpqeld-fnqpaplprqwVNNGFAGWn--gQARIEQPqegYAIIX 224 Escherichia coli...
NP_519204   190 ARtp---gMRVRFeaetVWPMDa--DEVAtgrrpvgerea--fgdarplpedsFSVYYSGWr--qLAEVRHAs-gAVLTL 259 Ralstonia solana...
NP_435283   159 VRep---dTTLHApargVWLEQs--DHLPkahdaiaaqadldfnrpkplparwINNWFDGWd--gKARIHWPsrgLAVDV 231 Sinorhizobium me...
YP_112070   163 VRds---dTQLHAradgWWSEDs--LHLPkrwhalvdndssgfgaprslpsnfFNTVYTGWh--gRADIWWPgrgLALQI 235 Burkholderia pse...
14026894    169 PRrp---rTLLLAsahsVWLEDe--RHLPtgvvplasrpdwdfsqaaplpdawVNNAFEGWn--gHASIIQPddaIAVTV 241 Mesorhizobium lo...
ZP_02188638 163 PRtp---eMGLWFaaatQWPPVd--GKFPagpqsipaeld---fsepqplitgLDQGFGDWgg-dAHAIWPEr-gLALAI 232 alpha proteobact...
ZP_01103038 172 PSeg---lLSVQAdcaaFLAVDd--DGLPsaihrdaqeca--dlaegrvpargVDSDFVDWkh-kATLLWRD---RALSL 240 Congregibacter l...
6458455     162 QRiqdgvdPTLHFdaalVYDTDe--RQLPtggarpvnpeed-frqpsavgtrsPDATYTAWdg-vARLDWGE---RALTL 234 Deinococcus radi...
NP_356457   167 AVpl---sSHAETdarlEYPLDa--LNVPtgneahprs------srsipaatgYTLHFRYWs--tATVELDK---GTLLL 230 Agrobacterium tu...
NP_825698   147 NRnl--gqDDARVdftpAWQEErgaDHLPtgnrva-------------plpgpWDDCFGMPdgvhVTLSWPGq--LELTV 209 Streptomyces ave...
Feature 1                 #                  #                                     
3NRE_A      225 ETTppaPCYFIFVsdpafdkgyafDFFCLEPXshapddh----hrpeggDLIALAPGESTTSEXSLR 287 Escherichia coli K12
NP_519204   260 RADdplDHCILHApg-------gaGYFCLEPVshvadainlsaqgwdgtGLRVLAPGAALHLRMRLL 319 Ralstonia solanacearum GMI1000
NP_435283   232 DASeglRQYVVFSpaa------aaDFFCFEPVthpvdafn-lpgkaeahGLKILEPDESLAVSARVA 291 Sinorhizobium meliloti 1021
YP_112070   236 EAQaplNRYIVYSpga------eaDFFCFEPVshdvnahn--apsplkhGLVELAEGESLHLSARFT 294 Burkholderia pseudomallei K96243
14026894    242 EASpslNVFVLYSpar------daDFFCFEPVshvvd-------ahhgsGLTTLEKGESTSAHLRLR 295 Mesorhizobium loti MAFF303099
ZP_02188638 233 HGGaalSHFIVFTpa-------dqDFLCLEPVthcidasnlafqgvadtGDRTLAPDERLAVTVRFK 292 alpha proteobacterium BAL199
ZP_01103038 241 SADpvfSALHVFRpg-------dkALLCLEPVshltgama-rerlpsipSPQMLGSGETLEGSIRFH 299 Congregibacter litoralis KT71
6458455     235 TADnvfSHLVVFAap--------dGSLALEPTshatdafnlaargvggvDLRVLEPGQALAGAVRFT 293 Deinococcus radiodurans R1
NP_356457   231 EADpifEYLAVHRm---------eKYLCLEPVsmaagalclpeteresrGLRTILPEGRLSGRISLS 288 Agrobacterium tumefaciens str...
NP_825698   210 ASRe--EWVVVYDeq--------pEAVCVEPQtgppd--------glntRPRLVTPIEPLEATTTWT 258 Streptomyces avermitilis MA-4680

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