4KCA,1GYE,1UV4


Conserved Protein Domain Family
GH43_ABN

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cd08988: GH43_ABN 
Click on image for an interactive view with Cn3D
Glycosyl hydrolase family 43
This glycosyl hydrolase family 43 (GH43) subgroup includes mostly enzymes with alpha-L-arabinofuranosidase (ABF; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Statistics
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PSSM-Id: 350102
Aligned: 5 rows
Threshold Bit Score: 322.158
Created: 17-Jun-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitechemical
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: active site [active site], 3 residue positions
Conserved feature residue pattern:[DEN] [DEN] [DEN]Click to see conserved feature residue pattern help
Evidence:
  • Comment:Three active site residues of the beta-propeller architecture of glycoside hydrolase families GH32, GH43, GH62 and GH68.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      #                                                                              
4KCA_A    126 HDPSIVWDpsskTYYIFGSh-----------RAAAKTTDlMSWTAFtapwktatsnnaannvafetpavkkvkkggvdvd 194 cattle
1GYE_B      6 HDPVMTREg--aTWYLFSTgp---------gITIYSSKDrVNWRYSdrafateptw------------------------ 50  Cellvibrio japonicus
ABX75732   47 PDPTAIYKq--gTYYAYATstd------gfnIPLAKSKSgGNYQIVgealpnl--------------------------- 91  Lactococcus lactis...
ESU72075   50 ADPSIIKGsd-gYYYAYGTeddwgdghgphlIPIIRSKDlIHWTFYrdafaqkp-------------------------- 102 Geobacillus sp. MAS1
1UV4_A     13 HDPTMIKEg--sSWYALGTglte-----ergLRVLKSSDaKNWTVQksifttplsw------------------------ 61  Bacillus subtilis
Feature 1                                                                                     
4KCA_A    195 fpafsatkwsakggsgysvdgNMWAPDVIYNkvlKKWCMYLSIngn-awySSIILLTAdniegpylyqgpvviggfkngt 273 cattle
1GYE_B     51 -----------akrvspsfdgHLWAPDIYQHk--GLFYLYYSVsafgkntSAIGVTVNktlnpaspdyrwed-------- 109 Cellvibrio japonicus
ABX75732   92 ---------------pvwaqgSIWAPHISQVs--KRYLLYFSVidnrskkRSIGLALAnnpqgpfkaee----------- 143 Lactococcus lactis...
ESU72075  103 --------------gwkegggGLWAPDISWHq-dGKYYLYYAFsiwgdpnPAIGVATAakpggpftdhg----------- 156 Geobacillus sp. MAS1
1UV4_A     62 -----------wsnyvpnygqNQWAPDIQYYn--GKYWLYYSVssfgsntSAIGLASStsissggwkdeg---------- 118 Bacillus subtilis
Feature 1                                        #                                            
4KCA_A    274 eyketdfelvlgpqsslperyatggkwgdrypNNIDPCVFYDeeGKLWMTYGSWs------gGIWMIELDentglrdydv 347 cattle
1GYE_B    110 ------------------kgiviesvpqrdlwNAIAPAIIADdhGQVWMSFGSFw------gGLKLFKLNddltrp---- 161 Cellvibrio japonicus
ABX75732  144 ----------------------kpvvtddnagGLIDPDLFQDsdGQNYLLYKNDgnaigktsSLWLQKLSknglvvtgka 201 Lactococcus lactis...
ESU72075  157 ---------------------plftsesigvdNSIDPQFFQDedGKSYLFWGSFh-------GIYGVQLTddglh----- 203 Geobacillus sp. MAS1
1UV4_A    119 ---------------------lvirstssnnyNAIDPELTFDkdGNPWLAFGSFw------sGIKLTKLDkstmk----- 166 Bacillus subtilis
Feature 1                                             #                                       
4KCA_A    348 tyeltgsgngitvdpyfgKKIAggy-----------yvsGEASYIEYIg-GYYFLFVTYGGLAaggvasdynnggYQMRV 415 cattle
1GYE_B    162 ------------aepqewHSIAklersvlmddsqagsaqIEAPFILRKg-DYYYLFASWGLCCrkg------dstYHLVV 222 Cellvibrio japonicus
ABX75732  202 erl--ltntevknpndngKSETvl--------------tIEAPYLTQApdGTYVLLFSAGSYAta---------nYFTGY 256 Lactococcus lactis...
ESU72075  204 -------------tvgqkFQIAdt--------------sYEAPYVIKRn-GFYYLFVSAGTCCdge------nstYHVRV 249 Geobacillus sp. MAS1
1UV4_A    167 -------------ptgslYSIAarpn---------nggaLEAPTLTYQn-GYYYLMVSFDKCCdgv------nstYKIAY 217 Bacillus subtilis
Feature 1                                                                                     
4KCA_A    416 FRSekpdGPYLDARGtdavfasykldfgpdandnrgvnifgaygdwgnqtkgknserSQGHNSIIaaedgrTYLVYHTRf 495 cattle
1GYE_B    223 GRSkqvtGPYLDKTGrdmnqgggsl-----------------------likgnkrwvGLGHNSAYtwd-gkDYLVLHAYe 278 Cellvibrio japonicus
ABX75732  257 AISkklsGPYHYKGAlattas------------------------------lknqivGPGGAELVqgknnvETLLLHGWi 306 Lactococcus lactis...
ESU72075  250 GRSesvkGPYKDRKGipllegggttila----------------fnekpgkngkqfvGPGHNAIVtddkgnDWIVYHAId 313 Geobacillus sp. MAS1
1UV4_A    218 GRSksitGPYLDKSGksmlegggti-----------------------ldsgndqwkGPGGQDIVn----gNILVRHAYd 270 Bacillus subtilis
Feature 1                           
4KCA_A    496 qn------rgeEHEVRVHQVFQ 511 cattle
1GYE_B    279 aa------dnyLQKLKILNLHW 294 Cellvibrio japonicus
ABX75732  307 ngvn---ktksSRQLYELSFFW 325 Lactococcus lactis subsp. lactis KF147
ESU72075  314 eddprllngatKRPLMIDPIIW 335 Geobacillus sp. MAS1
1UV4_A    271 an------dngIPKLLINDLNW 286 Bacillus subtilis

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