4O8N,3WMY,4N1I,4N2Z,4PVA,4PVI,5B6S,5UBJ,4N4B


Conserved Protein Domain Family
GH62

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cd08987: GH62 
Click on image for an interactive view with Cn3D
Glycosyl hydrolase family 62, characterized arabinofuranosidases
The glycosyl hydrolase family 62 (GH62) includes eukaryotic (mostly fungal) and prokaryotic enzymes which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. These enzymes show significantly different substrate preference with rather low specific activity towards natural substrates and differ in catalytic efficiency. They do not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor do they display any non-specific arabinofuranosidase activity. The synergistic action in biomass degradation makes GH62 promising candidates for biotechnological improvements of biofuel production and in various biorefinery applications. These enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan.
Statistics
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PSSM-Id: 350101
Aligned: 40 rows
Threshold Bit Score: 385.846
Created: 24-May-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitechemical
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: active site [active site], 3 residue positions
Conserved feature residue pattern:[DEN] [DEN] [DEN]Click to see conserved feature residue pattern help
Evidence:
  • Comment:Three active site residues of the beta-propeller architecture of glycoside hydrolase families GH32, GH43, GH62 and GH68.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                      #                                              
4O8N_A     85 LPSTYRWTSTGALAQPRsgw---------vsLKDFTVVPYNGQHLVYATthdt----gtrWGSMNFEPfgDWSQMATArq 151 Streptomyces therm...
4N2Z_A     22 LPTTWQWTSTGPLVGPKndgr------giagIKDPTIILINGTHHVFAStaq-----sagYNLVYFTFa-DWADAPNAtf 89  Podospora anserina
AGF55270   34 PNPTWQVGSVCFYNGPTnawd-------avsVKDPSIVYANGKYHLFYTgydk----tgkFQMGYASAs-TINGLSSAqh 101 Clostridium saccha...
EMI17604   65 QSGDFRWRVSPPLIAVDparmpessqhpwlaIKDPSIVRYQGRWHLFCTlrkdk-qgdgrIRIGYLSFa-DWADASGAdw 142 Rhodopirellula mai...
KPK44338   19 LPDEFSWSLAAPVLTAAdppdd-----erfsVKDPTIVRFESNWHLFYTvrsk----krsHQIEYITFk-QWQDANTVdr 88  Phycisphaerae bact...
OIP05972   53 FRGEFQWRLGPMLFAPTkspdd-----tyysVKDPSIVFHGGSWHLFVTvrgk----arsHQIEYLAFt-DWGKPEEAtr 122 Armatimonadetes ba...
OMP75514   45 ANPTWYADARCFLDGPAgafd-------dlaVKDPSIVYSGGKYHLYYTgrdkg--tgglWRMGYAAAt-SIAGLKTAsr 114 [Flexibacter] sp. ...
OOV18643   47 VISSPKWSVTGKIFEQGaagsf-----esvaVKDPTLVYDGGKWHVFYTgtd-----gnnWKMGYVNTv-SLFNMKADpr 115 Flavobacterium sp....
SKA98221   26 ALNGQHWTVTHSQLFRAgppgs----fdeiaVKDPTIVQHEGQWHVFYTakpksskervpAELGYATAs-SLEGLHKAeh 100 Prosthecobacter de...
OYP29516   60 LDGRFEWRVSQTLLSTNdgklpdssehpwiaIKDPSVVQHDGRWHLFCSlrkki-dgngrIRIGYLSFt-QWDEANEAtw 137 Rhodopirellula sp....
Feature 1                                                                                     
4O8N_A    152 nam------nsptVAPTLFYFAPKDIWVLAYQwg-------gSAFSYRTshdptdPNGWSSeqvlfsgs------iadsa 212 Streptomyces therm...
4N2Z_A     90 yyldqaplgtgyrAAPQVFWFAPHKLWYLVYQn---------GNAAYSTnpdinnPKGWTApkvfypdgmpkiieqnige 160 Podospora anserina
AGF55270  102 kklnlngngtgsyGAPQVFYMESKQMWYLIYQg--------sLGACYATttniddPNSWSGpkslga-----------sg 162 Clostridium saccha...
EMI17604  143 sald---ltmgyhGAPQIFYFTPHKKWYLVYQatdet-rdlkYGPCYSTnddiskPANWTRpeplyvv--------kega 210 Rhodopirellula mai...
KPK44338   89 hvln---lsdgyyCAPQVFYFAPHKNWYLIYQvidqsrkpalQPAYSRTtdi-tdPNSWTKpvllftkn-------pdnl 157 Phycisphaerae bact...
OIP05972  123 qmlt---mhsghfCAPQVFYFEPHRKWYLVCQasdes-wdpkYGAAYATtddiadPDSWSKlrplghk--------haeg 190 Armatimonadetes ba...
OMP75514  115 tymsa-lnagsyfCAPQVFWFPAKGKWFLIYQs--------gQGASFSTstdvgnPGSWTPvssmg-------------f 172 [Flexibacter] sp. ...
OOV18643  116 rfmns-lngggyfCAPQVFNFPVKGKWYLIYQs--------gLGATYSTntsvsnYGGWAAgktmg-------------i 173 Flavobacterium sp....
SKA98221  101 iqmlp--ilggvmIAPQVFYFAPQKLWYLIGHtlv----dkkLQPVFSTnpdianVQGWIPmqrlqtn--------rqat 166 Prosthecobacter de...
OYP29516  138 qlln---lteeyhGAPQVFYFAPQQTWYLIYQavdst-rglkYGPCYSTnkditePQDWTLpkplyev--------kagn 205 Rhodopirellula sp....
Feature 1         #                                                             #             
4O8N_A    213 tgpIDQTLIGDdtHMYLFFAGDn--GKIYRASMPIGDFPgsfGSTATvvms--------dtrnNLFEAPQVYKLqgqnRY 282 Streptomyces therm...
4N2Z_A    161 gywVDMWVICDsaSCHLFSSDDn--GQLYRSETSLEQFPn-gMSQPViamq--------dnrnDLFEAACVYSLpd-gKY 228 Podospora anserina
AGF55270  163 nmgWDYWVICDdkYAYLFNTPSdgsHNIYCRKTSLANFPn-gWGPATva------------vkDTFEGACVYKSkadnNY 229 Clostridium saccha...
EMI17604  211 kagLDYWLICDdeKAHLFFTTLn--GQMWRAETAIENFPnhgWSDPQivl-----------qaDIFEASHTYKLkdqdRF 277 Rhodopirellula mai...
KPK44338  158 kmwIDFWVICDeaRGYLFFTSLn--GQMWRSEAKLADFPh-sWSRPTial-----------tgDIFEASHTYSLggsgKY 223 Phycisphaerae bact...
OIP05972  191 kagLDFWIICNdaKAHLFFTTLn--GKMWREETSLTDFPt-gWSEPKlai-----------qgDVFEASHTYRLkgldKY 256 Armatimonadetes ba...
OMP75514  173 tdgIDFWCISDgtYMYCFYSAQdgsRTIKRRRTTVANFPy-nWEAPTva------------atSTFEAVHVYKSkadaKY 239 [Flexibacter] sp. ...
OOV18643  174 ndgIDFWCIADnsHVYCFYSAQdgsNTIKRRRTTIANFPn-gWEAPTia------------atNTFEAPHVYKNkadgKF 240 Flavobacterium sp....
SKA98221  167 rtwIDFWVICDeaKAHLFYSDHt--DKLWRMECPLAEFPq-gLSSAQeqlalqasgvsergawNFHEAAHIYRVqsdgRY 243 Prosthecobacter de...
OYP29516  206 kagLDFWVICDdqFAFLFFTSLd--GTMWRAQTELANFPdkgWTDPEval-----------raDIFEASHTYRVgntgRY 272 Rhodopirellula sp....
Feature 1                                                                                     
4O8N_A    283 LMIVEAiga------------qgqRYFRSFTATSLdgeWTPQAt----SESNPFAgkan------sgatWTDDISHGELI 340 Streptomyces therm...
4N2Z_A    229 LLLVEAigt------------dghRWFRSWTADSIrgpWQGLAn----TEQNPWArsnnvq---fdgdvWTKSISHGEII 289 Podospora anserina
AGF55270  230 YMLVEDmk--------------dnRYYELHQASSLsgpWTKVSekwasSHNLSYTan-----------kWTNRVSHGEIL 284 Clostridium saccha...
EMI17604  278 LTIVEAqag-------------krRYFKAFTADALdgqWEPLAa----SRDQPFVspkkvv---nqsesWATSYSHGELI 337 Rhodopirellula mai...
KPK44338  224 LTIIEAegptma-------gigrrRYYKAYTADSLagyWQPLAa----MVEGPFAgpanvq---qegqhWTDSFSHGELI 289 Phycisphaerae bact...
OIP05972  257 LTVIEAqgg------------hgwRYFKAYVADRLdgeWTPVAd----TKEKTFAsmanvt---pvgnrWTDCISHGELL 317 Armatimonadetes ba...
OMP75514  240 YMIVEDi----------------nRYQELWTASSLggtWTQVAekwaaRDNLRFLse-----------vWTDQVSHVEVI 292 [Flexibacter] sp. ...
OOV18643  241 YMMVEDa----------------aRYFELWSATTLngtWTKVSet-waTKANLTErn----------ehWTDQISHGEIL 293 Flavobacterium sp....
SKA98221  244 LALLEGgyshpvrknvmeardsrnRFMLAFTAERLegpWTRVEp----SENEFLAerdhlfnpdgtrclRYTQVSHPELI 319 Prosthecobacter de...
OYP29516  273 LTFVEAqrg-------------rrRFFKAYLADNLagvWAPLAd----SDKMPFVspanvl---nqstsWAQSYSHGELL 332 Rhodopirellula sp....
Feature 1                                                    
4O8N_A    341 RTTADQTM-TVDPCNLQLLYQGRd--pGSGGTYDl--LPYRPGLLTL 382 Streptomyces thermoviolaceus
4N2Z_A    290 RDGTVDEKlLIDPCNIRFMYQGMd--pSAGGEYNa--LPWRLGFIAH 332 Podospora anserina
AGF55270  285 RSGINQKLeINDINKVDFLIQGSt---DGNVAYEk--IKWNLGIIKN 326 Clostridium saccharoperbutylacetonicum
EMI17604  338 RDGFNEKM-RMDPAELRLLFQGAndvqYRSGDYGq--IPWRLGLLDL 381 Rhodopirellula maiorica
KPK44338  290 RSGCDQTL-EVDPARLRFLFQGVtdedKRGKKYGe--IPWRLGILKP 333 Phycisphaerae bacterium SG8_4
OIP05972  318 RVGCDQRL-EVDSADLRCVFQGVldkdRGDKPYGe--IPWRLGLLAP 361 Armatimonadetes bacterium CG2_30_66_41
OMP75514  293 RSGTDDKLeIDNIDRCQLLIQGVp--nGSYGDYGn--IPYDLGVIRN 335 [Flexibacter] sp. ATCC 35208
OOV18643  294 RSGNNQLMeINNIDRCEVLIQGVv--nGNFGSYIk--IPYDLGLMQN 336 Flavobacterium sp. LM4
SKA98221  320 RSGIDQRL-EVPDYRLKLLFQGFdg-sQVKDDYNyndLPWELAIMEN 364 Prosthecobacter debontii
OYP29516  333 RESNDQHL-SIAPDQMKMVFQGAsdseYGVGSYGd--IPWRLGLLEL 376 Rhodopirellula sp. MGV

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