Conserved Protein Domain Family
CARD_MDA5_r2

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cd08819: CARD_MDA5_r2 
Caspase activation and recruitment domain found in MDA5, second repeat
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Statistics
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PSSM-Id: 260078
Aligned: 11 rows
Threshold Bit Score: 148.251
Created: 18-May-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
NP_001093664  112 HDECLQLLNLLQPTVVDkLLVTDVLDKCVeeQLLTGEDRNRVSAAen-dGNESGVRELLKRIV-QKENWFSTFLTVLRQT 189  pig
AAG54076      111 HDEYLQLLNLLQPTLVDkLLVRDVLDKCMeeELLTIEDRNRIAAAen-nGNESGVRELLKRIV-QKENWFSAFLNVLRQT 188  human
XP_001374256  111 YDQCVQLLDILQPTLVDkLQATAVVDKCLekALLTKEDTNRVINLnenyGNEHAVRELLNRIV-QKEDWFSKFLSILRET 189  gray short-ta...
ACT68336      105 NDSCVRLIDLMQLSLIN-MKTGDVCAHCFsqGLLTQEDHENITKAtenhGNIKGARVLLKRLVkNEAGWFSKFLQALEDT 183  grass carp
CAG09339      106 NDYCIRLIQLLSPSLVD-MKTSAVCVQCLsqDLITEDDSENIEAAtrnqGAKAGARELLGRIVrGRPGWFSKFLDILLKT 184  spotted green...
AEX01716      110 NDYCVKLVELLSPRLLD-MNTVDVCIHCSseGLLTQDDSEIVTATttnqGNRSGARELLRCIVrGQHGWFSKFLRVLRET 188  orange-spotte...
EMP38721      110 HDVCVRLVQLLYGTLVDkLRSRQVTNKCVekGLFQDDDQERILAAtenhGDREGARELLSRII-KKKDWFSPFLAVLHET 188  green seaturtle
ADU87114      106 NDQCVRLIQILSPGLVG-MKTEEVCLHCLsrGLITAEDSEIIKAEttsrGPRSGARELLRSIVrGRPGWFSNFLQILRET 184  bastard halibut
AEM00325      209 HDLCVHLVQLLHGTLVDnMQTRQVAEKCLelGIFQEEDLVGIETViesrGNRDGARELLSRIV-QKKDWFSQFLVALRET 287  chicken
AFS34611      103 NDTYTRLIDLLNFTLIN-MKTTDVCHSCYerKILTAEDREIILAVtenhGNRAGARMLLSQLPkNEFGWFSQFLDALRET 181  channel catfish
CAZ27715      108 NDNCVRLIELLSPRLLG-MKTTDVCWDCFskGILTAEDREIILAEcqnrGNMGGARELPRRIVrFPPGWFSTFLKALQVT 186  rainbow trout
NP_001093664  190 GNDALARELTGTD 202  pig
AAG54076      189 GNNELVQELTGSD 201  human
XP_001374256  190 EHIKLAEDFIAVD 202  gray short-tailed opossum
ACT68336      184 EHHELVRELRGEP 196  grass carp
CAG09339      185 EHKNLYSELTGGS 197  spotted green pufferfish
AEX01716      189 GHQNLYFELTGST 201  orange-spotted grouper
EMP38721      189 KHGNLADELSGNV 201  green seaturtle
ADU87114      185 EHQSLYELTGGSP 197  bastard halibut
AEM00325      288 QHESLADDLSGNT 300  chicken
AFS34611      182 EHTRLVQELQGEP 194  channel catfish
CAZ27715      187 EHNDLCKELTGES 199  rainbow trout
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