Conserved Protein Domain Family
CARD_MDA5_r1

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cd08818: CARD_MDA5_r1 
Caspase activation and recruitment domain found in MDA5, first repeat
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), first repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Statistics
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PSSM-Id: 260077
Aligned: 11 rows
Threshold Bit Score: 150.919
Created: 18-May-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
NP_001093664    9 DQNFCYLISCFRARVKRYIQVEPVLDYLTFLPAEVKEQIQRAVattGNINAAELLLNTLEkg-vWPPGWTRMFVQALREt 87   pig
BAF85630        8 DENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVatsGNMQAVELLLSTLEkg-vWHLGWTREFVEALRRt 86   human
XP_001374256    8 EKNFLNLIQCFRPRLKQYIRVEPVLDYLTFLDREKKEHIRQTAatqGNAVAAEFLLSTLEkg-tWGPGWAQEFLTGLNHg 86   gray short-ta...
CAG09339        6 DEIHERLIEYFMPRLRNLIVVQQVLDFLDFIEPDQKERIRQRNisrGNLAAADALITAVTqk-pHQAGWFRAFVDALEQs 84   spotted green...
ACT68336        6 DAETRHILDCFRDRLKRIIIVEPLLDLLHFLEPDRKDRIRAKLrldGDISAAALLIDEILk--tHDKGWSRELITALETv 83   grass carp
AEX01716       10 DDVYVNLIDYCRPRLRERIVVERVLDYVLFIGTEQKELIRQKArtdGNLAATDLLISAVIkk-pHESGWFRAFVDALENs 88   orange-spotte...
AFS34611        3 HEQEKKIIDCFRNRLKQLIRVAPVLDVLHFLSDEQKELIKVKLrneGEIKAADLLIQEIIsk-tYPDGWFRELITALEQa 81   channel catfish
ADU87114        6 DEAWESFIGDIRPRLKELVVVERLLDHVHFIGPEQKEHIRQRAraeGDRAAADLLIDAVTrr-pHSLGWFRAFVDALASs 84   bastard halibut
ADD83027        7 DERFLYMISCFRPRLKRCIRVQPVLDWLPSLSAEEKDKVRAAAlqrGEVEGAEELLCAVErg-rRDPGWFTEFLLALKKg 85   chicken
EMP38721        7 EEQFLYLISCFRQRLTQSIQVAPVLDRLATLSPQEKERIRAVAaqqGDPQAAGLLLDAVArg-cQQQGWIQQFVTALQQg 85   green seaturtle
CAZ27715        7 NTTNISLIEDFRPRLRKLIEIEFVLDHLNFLDNDNKDLIRTKArkeSNLKAVDLLIDTIIrirpLPKGWFREFVDALSAg 86   rainbow trout
NP_001093664   88 gnsLAARYVNPDL 100  pig
BAF85630       87 gspLAARYMNPEL 99   human
XP_001374256   87 gctLAARYMNPDL 99   gray short-tailed opossum
CAG09339       85 gcgHAADYIQNKI 97   spotted green pufferfish
ACT68336       84 gctNAVNYVLNSP 96   grass carp
AEX01716       89 gceAAAEYIQVNP 101  orange-spotted grouper
AFS34611       82 gckQAANYMENSP 94   channel catfish
ADU87114       85 gcdYAADIMQEKL 97   bastard halibut
ADD83027       86 gcdLAAGYVNPSQ 98   chicken
EMP38721       86 gsdLAACYVNPSL 98   green seaturtle
CAZ27715       87 gckHAATYVEDSP 99   rainbow trout
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