4A2W,2LWD


Conserved Protein Domain Family
CARD_RIG-I_r2

?
cd08817: CARD_RIG-I_r2 
Click on image for an interactive view with Cn3D
Caspase activation and recruitment domain found in RIG-I, second repeat.
Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), second repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Statistics
?
PSSM-Id: 260076
Aligned: 9 rows
Threshold Bit Score: 127.564
Created: 18-May-2010
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
CARD1 interfacehelical insert
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:CARD1 interface
Evidence:
  • Structure:4A2W: Anas platyrhynchos Rig-I CARD2/CARD1 interface, contacts at 4A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                           ####                     #   # ##               
4A2W_A       102 LELHRQLLKRIEATMLE-VDPVALIPYISTCLIDRECEEIQQISENRSKAAGITKLIECLCRsDKEHWPKSLQLALDTtg 180  mallard
2LWD_A        10 LEEYRLLLKRLQPEFKTrIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRsDKENWPKTLKLALEKe- 88   human
NP_001157171  99 TKIHRVLLERIEPSFTKmIKPRDLLLHLGDCLRKREYEEIQAIENQKGPIAAAERLTDCLKRsDKQNWFKLLKSALLScd 178  Atlantic salmon
CAY86112      99 LKEHRILLERIEPSITKlIKPGELLTHMNDCLKLRECEEIKAVETQKGYIAASEKLVDTLLRsDKPNWFKVLKMALDAcn 178  Cyprinidae sp....
ACA61272      99 LELHRQLLKRIEATMLE-VDPVALIPYISTCLIDRECEEIQQISENRSKAAGITKLIECLCRsDKEHWPKSLQLALDTtg 177  mallard
O95786       100 LEEYRLLLKRLQPEFKTrIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRsDKENWPKTLKLALEKe- 178  human
AAD19826     100 LEEYRLLLKRLQPEFKTrIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRsDKENWPKTLKLALEKe- 178  human
EMP30788     100 LEVHRQLLKRIEATMRE-IDAEQIIPFLNTCLIDRECEEILQVRELKGRMAGAVKLIECLSRsDKENWPKTFHLALERag 178  green seaturtle
AFS34609      99 LDPHRKLLDQVEMSITKnMKPRELLPYMSDCLTQRECEEIRAVDEQKGCIAASERLVESLRHcDKSNWFKVFKLALENcs 178  channel catfish
Feature 1                    
4A2W_A       181 -yYRASELWDIR 191  mallard
2LWD_A        89 -rNKFSELWIVE 99   human
NP_001157171 179 ltDALQLLEPDT 190  Atlantic salmon
CAY86112     179 -cDQALELLESN 189  Cyprinidae sp. EPC
ACA61272     178 -yYRASELWDIR 188  mallard
O95786       179 -rNKFSELWIVE 189  human
AAD19826     179 -rNKFSELWIVE 189  human
EMP30788     179 -yDPTSKLWNMK 189  green seaturtle
AFS34609     179 qnLALQLLDPDE 190  channel catfish

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap