1WMG,1WMG


Conserved Protein Domain Family
Death_UNC5-like

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cd08781: Death_UNC5-like 
Click on image for an interactive view with Cn3D
Death domain found in Uncoordinated-5 homolog family
Death Domain (DD) found in Uncoordinated-5 (UNC-5) homolog family, which includes Unc5A, B, C and D in vertebrates. UNC5 proteins are receptors for secreted netrins (netrin-1, -3 and -4) that are involved in diverse processes like axonal guidance, neuronal migration, blood vessel patterning, and apoptosis. They are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Statistics
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PSSM-Id: 260051
Aligned: 21 rows
Threshold Bit Score: 109.288
Created: 22-Feb-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:1WMG, Homo sapiens Unc5h2 homodimer, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                           ## ##           #  ##  ##                     
1WMG_A         12 IPLSIRQKICSSLDapnsrgNDWRLLAQKL-SXDRYLNYFATKa--SPTGVILDLWEARqqd-dgDLNSLASALEEXGKS 87   house mouse
Q26261        822 LPFGVKDELARLLDmpneshSDWRGLAKKL-HYDRYLQFFASFpdcSPTSLLLDLWEASssgsarAVPDLLQTLRVMGRP 900  nematode
XP_319812     821 LSKDVKRKLCRCLDpptqkrNDWRMLAAHL-NVDRYLTYFATRp--SPTDQILDLWECRnrd-lnALQQLIEICRTMERP 896  Anopheles gam...
EFA04571      880 LSRQLRKQLCQCLDpptprgNDWRMLAHAL-SVDRYINFFATKp--SPTDCILDLWEARnrq-snALTELKQIFSDMERF 955  red flour beetle
NP_001161598  983 IPRPTRNKLCICLDrpmkkgNDWRLLARKL-KVDRYINFFATKp--SPTEHILDLWEARcrg-erALSDLLRIFKEMGRN 1058 Saccoglossus ...
Q8IV45        408 LPPELFEQLRMLLEpnsitgNDWRRLASHLgLCGMKIRFLSCQr--SPAAAILELFEEQn----gSLQELHYLMTVMERL 481  human
EHJ68829      928 LSVRVKRQLCAILDppnargNDWRALAARL-GVDRYTTWFATKs--SPTEAILELWECRerg-pgATASLAAALRQMERH 1003 monarch butte...
BAN15045      946 LSKPVRTALCQCLDipqpkgNDWKLLATKL-GVDGYLNFFGIKp--SPTDQILDMWEARdse-egALMRLAGAFQEMGRH 1021 Hemicentrotus...
CCD82049      740 LPVVTTQRLCKLLDek---eGEWQKLAKHM-RMERYIFYLKSQp--SPTTVLLNMWEACnrd-epSVNELKAIFSAMDRA 812  Schistosoma m...
BAJ22068      919 LSFTTRQQLWPLLD------PSWQTLANHM-LLNGNLNYFSEKm--SPSDALLDLWEARcrd-egAIADLINILRVIGRN 988  Dugesia japonica
Feature 1                
1WMG_A         88 EXLVAXA 94   house mouse
Q26261        901 DAVMVLE 907  nematode
XP_319812     897 DAVAILE 903  Anopheles gambiae str. PEST
EFA04571      956 DAVNILD 962  red flour beetle
NP_001161598 1059 DVVDLIE 1065 Saccoglossus kowalevskii
Q8IV45        482 DCASAIQ 488  human
EHJ68829     1004 DAADLLH 1010 monarch butterfly
BAN15045     1022 DAVTIVQ 1028 Hemicentrotus pulcherrimus
CCD82049      813 DCANLLE 819  Schistosoma mansoni
BAJ22068      989 DCAMIVE 995  Dugesia japonica

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