2CFI,1S3I,2BW0


Conserved Protein Domain Family
FMT_core_FDH_N

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cd08647: FMT_core_FDH_N 
Click on image for an interactive view with Cn3D
10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain
This family represents the N-terminal hydrolase domain of the bifunctional protein 10-formyltetrahydrofolate dehydrogenase (FDH). This domain contains a 10-formyl-tetrahydrofolate (10-formyl-THF) binding site and shares sequence homology and structural topology with other enzymes utilizing this substrate. This domain functions as a hydrolase, catalyzing the conversion of 10-formyl-THF, a precursor for nucleotide biosynthesis, to tetrahydrofolate (THF). The overall FDH reaction mechanism is a coupling of two sequential reactions, a hydrolase and a formyl dehydrogenase, bridged by a substrate transfer step. The N-terminal hydrolase domain removes the formyl group from 10-formyl-THF and the C-terminal NADP-dependent dehydrogenase domain then reduces the formyl group to carbon dioxide. The two catalytic domains are connected by a third intermediate linker domain that transfers the formyl group, covalently attached to the sulfhydryl group of the phosphopantetheine arm, from the N-terminal domain to the C-terminal domain.
Statistics
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PSSM-Id: 187716
Aligned: 13 rows
Threshold Bit Score: 395.663
Created: 12-Feb-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #  ###                                                                    
2CFI_A        23 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAekDGVPVFKYSRWRAKgq------aLPDVVAKYQ 96   human
1S3I_A         1 MKIAVIGQSLFGQEVYCQLRKEGHEVVGVFTIPDKDGKADPDGLEAekDGVPVFKFPRWRARgq------aLPEVVAKYQ 74   Norway rat
2BW0_A        23 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAekDGVPVFKYSRWRAKgq------aLPDVVAKYQ 96   human
Q6GNL7         1 MKIAVIGQSLFGREVYRELLKEGHQVVGVFTIPDKNGKADPLGADAekDGIPVFKFPRWRVKgq------aIPEVVEKYK 74   African clawed...
CAG10748       1 MRIAVIGQSLFGQEVYKELRKDGHTIVGVFTIPDKDGKADPLATQAekDGVPVFKFPRWRVKgq------aIPEVVDQYT 74   spotted green ...
AAH24055       1 MKIAVIGQSLFGQEVYCQLRKEGHEVVGVFTIPDKDGKADPLGLEAekDGVPVFKFPRWRARgq------aLPEVVAKYQ 74   house mouse
XP_416314     23 LKLALIGQSIFGQEVYNKLRKEGHKVVGVFTVPDKNGQADPLALAAekDGTPVFKFPRWRAKgk------pIQEVIAAYK 96   chicken
XP_002587423   1 MKIAVIGQSQFGTEVYNLLKKEGHEIVGVFTIPDLQGKPDPLAVAGekDGVPTFKFPRWRVKgq------sIPEVVQQYQ 74   Florida lancelet
XP_001638214   4 LKIAIIGQSQFGLEVYRNLRIKGHEIVGVFTVPDIKGKPDILAAGAeeDGVKVFKFPRWRTKge------pIAEVVDKYK 77   starlet sea an...
XP_784777      1 MKIAIIGQSQFGEEVYKLLRKDGHEIVGVFTIPDVKGRADPLASSAegDGTKVFKFPRWRTKgq------pIEEVVNAYK 74   purple urchin
XP_002130073  24 MKIAVIGQSMFGADTYNILRKNGHKVVGVFTIPDVGGKQDPLAVAAsqDGVPVFKFKRWRLKgk------pIPEVVEQYA 97   Ciona intestin...
XP_002111368  21 LKLAIIGQSLFGMEVYKVLRQNGHEVVGVFTVPDIAGKPDPLAAQAqqDGVRVFKYPRWRKKgq------aIPEVLNEYK 94   Trichoplax adh...
NP_502054      1 MKIAIIGQSAFGVDVYKELRKNGHEIVVVFTIPDKNGREDLLAVEAakDGVPVQKPSRWRKKnpetgkfetLPEMLELYK 80   nematode
Feature 1                ##### ##    #        ####       #                   # ##  ##            
2CFI_A        97 ALGAELNVLPFCSQFIPMEIISaPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEV 176  human
1S3I_A        75 ALGAELNVLPFCSQFIPMEVINaPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFTIFWADDGLDTGDLLLQKECEV 154  Norway rat
2BW0_A        97 ALGAELNVLPFCSQFIPMEIISaPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEV 176  human
Q6GNL7        75 ALEAELNVLPFCSQFIPMEVIDcPKHGSIIYHPSILPRHRGASAINWTLMQGDKIGGFTVFWADDGLDTGDILLQRQCEV 154  African clawed...
CAG10748      75 RTGAELNVLPFCSQFIPMEVINhPKHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFTVFWADDGLDTGPILLQRECDV 154  spotted green ...
AAH24055      75 ALGAELNVLPFCSQFIPMEVINaPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFTIFWADDGLDTGDLLLQKECDV 154  house mouse
XP_416314     97 SVGAELNVLPFCTQFIPMDVIDcPKHGSIIYHPSILPRHRGASAINWTLIQGDKKAGFTIFWADDGLDTGPILLQRECDV 176  chicken
XP_002587423  75 ACGADLNVLPFCSQFIPMDVINtPKHGSIIYHPSILPRHRGASAINWTLIHGDKKAGFTIFWADDGLDTGPILLQRECYA 154  Florida lancelet
XP_001638214  78 ACGAELNVMPFCSQFIPMNVIDfPKHGSIIYHPSLLPRHRGASAINWTLMEGDKKAGFSIFWADDGLDTGPILLQKSIQV 157  starlet sea an...
XP_784777     75 ECGAELNVLPFCSQFIPMNVIDdPKHGSIIYHPSLLPRHRGASAINWTLMSGDKQAGFTVFWADDGLDTGPILLQKSVDV 154  purple urchin
XP_002130073  98 SCGAELNVMPFCSQFIPMNVIDhPKNGSIIYHPSILPKHRGASAINWTLMSGDKKAGFTIFWADDGLDTGPILLQRECDV 177  Ciona intestin...
XP_002111368  95 EVGADLNVMPFCSQFIPMDVINhPKHGSIVYHPSILPRHRGASAINWTIMEGDPKAGFTIFWADDGLDTGPILLQRSTEL 174  Trichoplax adh...
NP_502054     81 SFGAELNVLPFCTQFIPLEITEaPAKKSIIYHPSILPKHRGASAINWTLIEGDEEAGLSIFWADDGLDTGPILLQKKCKV 160  nematode
Feature 1                                                         
2CFI_A       177 LPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAPRLPQPEEGATYEGI 225  human
1S3I_A       155 LPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGTAPRCPQSEEGATYEGI 203  Norway rat
2BW0_A       177 LPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAPRLPQPEEGATYEGI 225  human
Q6GNL7       155 LPDDTVNTIYNRFLFPEGVKGMVEAVRLIAEGNAPRIKQPTEGATYDPM 203  African clawed frog
CAG10748     155 EPNDTVNTIYKRFLFPEGVKGTVEAVKLIAEGNAPKITQPAEGATYECI 203  spotted green pufferfish
AAH24055     155 LPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGTAPRRPQPEEGATYEGI 203  house mouse
XP_416314    177 GQNDTVDDLYNRFLFPEGVKAMVEAVHLIADGKAPRIPQPKEGATYEGI 225  chicken
XP_002587423 155 GPNETLDGLYNKFLYPEGIKAMAEAVQLIADGKAPRIPQSEDGATYEPM 203  Florida lancelet
XP_001638214 158 DPNDTVDTLYNRFLYPEGIKGMVEAVELIANGKAPRITQPEEGATYDKI 206  starlet sea anemone
XP_784777    155 DPNETVDTLYNRFLYPEGIKAMGEAVQLIYEGKAPRIVQPEEGATYDKL 203  purple urchin
XP_002130073 178 KANDTVDDIYNRFLYPEGIKAMGEAVQLIADGKAPKIVQSEEGASYEGI 226  Ciona intestinalis
XP_002111368 175 YPNDTVDTIYNRFLYPQGINAMATAVDLVATGDAPRVTQSEEGATYDKM 223  Trichoplax adhaerens
NP_502054    161 EENDTLNTLYKRFLYPAGVAAVAESVELIATGKAPRIVQPEEGASYEPY 209  nematode

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