3MOP,3MOP


Conserved Protein Domain Family
Death_MyD88

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cd08312: Death_MyD88 
Click on image for an interactive view with Cn3D
Death domain of Myeloid Differentation primary response protein MyD88
Death Domain (DD) of Myeloid Differentiation primary response protein 88 (MyD88). MyD88 is an adaptor protein involved in interleukin-1 receptor (IL-1R)- and Toll-like receptor (TLR)-induced activation of nuclear factor-kappaB (NF-kB) and mitogen activated protein kinase pathways that lead to the induction of proinflammatory cytokines. It is a key component in the signaling pathway of pathogen recognition in the innate immune system. MyD88 contains an N-terminal DD and a C-terminal Toll/IL-1 Receptor (TIR) homology domain that mediates interaction with TLRs and IL-1R. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Statistics
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PSSM-Id: 260026
Aligned: 28 rows
Threshold Bit Score: 87.6571
Created: 13-Nov-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
MyD88-IRAK4
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:MyD88-IRAK4 interaction site [polypeptide binding site]
Evidence:
  • Structure:3MOP; Four MyD88 DDs interact with four IRAK4 DDs within the Myddosome complex; contacts at 4A.
  • Comment:MyD88, IRAK4, and IRAK2 form the Myddosome complex which is assembled in a stepwise manner. MyD88 first recruits IRAK4, then the MyD88-IRAK4 complex recruits the substrates IRAK2 or IRAK1.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               # ##            ## #     #     #  ##                                  
3MOP_D     11 VRRRLSLFLNVRTQ------------VAADWTALAEEMDFEYLEIRQLETQa-----DPTGRLLDAWQGRpg---aSVGR 70  human
ABB76627   25 CRRRIAMYLNPEGSlip------dsdMFNDWCGYAELLNFSQPEIENMKRHk-----SPTEEMLHLWSTRndp-epKVGN 92  Chlamys farreri
EKC40065   34 ARKKLSLYLNVQSEivnd-----angLVSDYNGLAEMVGFGFLEIKEFERQk-----NPTDELLTEWTNRsdl-spTIGR 102 Pacific oyster
AEF32114   33 SRRKLSGFLDLEGAlvvvnheggdsdVVNDYSGLAELAGFDYNSIMNMKRQk-----SPTFELLEKWTGRn----gTVGN 103 Japanese littleneck
AFX68459   24 VRSKLGTYLDPEGFvt--------gdYSNDYQGLAEVIGFTFQDITNFQRQs-----KPTQEMLYQWGTRpel-spTVDN 89  Pacific oyster
AGG10812   34 ARRQIAMHMDKELTtina-----dngMLCDWRGLAEIVGFSNLEISKMERTg-----KPTEELLYEWETNsnc-dsTLGH 102 Mediterranean mussel
AGG10811   37 SRSKIALYLDDQSDiide-----dcgYVTDWNGLAELIGFTALEMRKFGRQk-----SPTQDLLLDWEMTpal-npTLGN 105 Mediterranean mussel
AFR54116   32 STKQLSQRLDVEGFvl--------geYSNDWYGLAERTGYMTKEMRKFEQHe-----SPTTALLNDWSTRlkm-spTVDT 97  Mediterranean mussel
EEN62349  762 KRLKLCQMLDWNLP------------LGNNWKMMVEKIGLDFQALKQIEEVsyregrSPTELLLQDWEARqpt-hfTQDN 828 Florida lancelet
EEN62389  552 KSRRMCELLDVECI------------YGNDWRLFAEKIGLDCQTLPVIASRra---gSPTEHVLTLWRQGhtdrsyDKQT 616 Florida lancelet
Feature 1             #  ##  ##  
3MOP_D     71 LLELLTKLGR-DDVLLELG 88  human
ABB76627   93 LISFLCKLER-FDVISDCR 110 Chlamys farreri
EKC40065  103 LWEFLVELGR-LDVLEDCK 120 Pacific oyster
AEF32114  104 LWTYLFLMER-FDVLVDCR 121 Japanese littleneck
AFX68459   90 LIKHLQTIGRsDDVITECA 108 Pacific oyster
AGG10812  103 LWSCLQQLDR-KDVLSDSK 120 Mediterranean mussel
AGG10811  106 LWKYLIELGR-LDVLQDCR 123 Mediterranean mussel
AFR54116   98 LLKYLVEIQR-PDVVLDSE 115 Mediterranean mussel
EEN62349  829 LYRILRQLER-KDVITDCG 846 Florida lancelet
EEN62389  617 LVEILQEMGR-PDVIQDLQ 634 Florida lancelet

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