6GVW,6H3C,5CW6,5CW4,5CW3,6R8F,5CW5


Conserved Protein Domain Family
MPN_BRCC36

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cd08068: MPN_BRCC36 (This model is not part of the current CDD release)
MPN domain of BRCC36
BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are JAMM/MPN+ deubiquitinase (DUB) proteins, possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-containing complex and is essential for the integrity of the complex. There are studies suggesting that MERIT40/NBA1 ties BRCA1 complex integrity, DSB recognition, and ubiquitin chain activities to the DNA damage response. It has also been shown that BRCA1-containing complex resembles the lid complex of the 26S proteasome.
Statistics
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PSSM-Id: 501537
Aligned: 47 rows
Threshold Bit Score: 217.116
Created: 22-Jul-2009
Updated: 30-Oct-2024
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteoligomerMPN+ (JAMM)
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:H H DClick to see conserved feature residue pattern help
Evidence:
  • Structure:6GVW: Mus musculus BRCC36 with bound zinc

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
6GVW_B        13 VQAVHLEsDAFLVCLNHALSTEKEEVMGLCIGElnddirsdskftytg------------------------------te 62  house mouse
CAD2221339     9 LSRVLIAdTVVNNCLSHAYVTEKEEVMGVLLGTvevvegvppakv----------------------------------- 53  Angomonas deanei
EPY28641      20 LSKVYVSdLVVENCLAHAFITEKEEVMGVLLGTieleegtpaarvp---------------------------------- 65  Strigomonas cul...
XP_001684250  20 LSEVRISdQVVQSCLRHAFTTEEEEVMGLLLGRievqpftelhidgsrdagfpaspadgavngvrsrgsgtavsiagaap 99  Leishmania majo...
KPI88898      16 LREVRVSeQVIHSCFRHAFTTEKEEVVGMLLGRletryysisgsntssaagasngaaspree-kaaacpslpipptssav 94  Leptomonas seym...
GBG88295       3 LTGVEVTtEVWLACVTHALSTETEEIMGLLLGDveype------------------------------------------ 40  Chara braunii
XP_057825237   3 LTGLKMCeEVWLTCLTHALSTETEEVMGLLFGDieyls------------------------------------------ 40  Japanese cedar
KAH7300083     3 LTCAKISeEVWLTCVTHALSTETEEIMGLLFGDieysd------------------------------------------ 40  Ceratopteris ri...
NP_001149966   3 LSSVKIGeEVWLTCLSHALTTETEEVMGLLLGDiels------------------------------------------- 39  Zea mays
GAQ78756       3 LTDVEVTaEVWMTCVTHALSTEKEEIMGLLLGDvlvyg------------------------------------------ 40  Klebsormidium n...
Feature 1                                                                       # #          #   
6GVW_B        63 mrtvqekmdtirIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERlaELTGRPMRVVGWYHSHPHITVWPSHVDVRT 142 house mouse
CAD2221339    54 pgsdapsakvskVAKVWASYVIDRSVRLSDRVEVAPQMLINATEEAERitHLTKRETRVVGWYHSHPQITPNPSVIDLNS 133 Angomonas deanei
EPY28641      66 gsdhnsrdgnskVAKVWSSYVMDRSVRLSDRVEVAAEMLINAAAEAERlsVEINQPTRVIGWYHSHPQITQYPSIVDLNS 145 Strigomonas cul...
XP_001684250 100 vplsasaakrekVAYIWGTHVGERNVQRSDRVEMSAESVASATEAADRmtTDTGVRTYVVGWYHSHPRIPAVPSPVDLCT 179 Leishmania majo...
KPI88898      95 rsppppgfaegkLAYIWATHISERSVQCSDRVEVSPESLASAAETADRvtAATGVNTAILGWYHSHPKIPVVPSVVDLRT 174 Leptomonas seym...
GBG88295      41 --------drtaVAHVWAVAPQTRSDRRKDRVETNPEQLAAASAEAERltAVTGRRTRVIGWYHSHPHITVLPSHVDVRT 112 Chara braunii
XP_057825237  41 --------ngsaTALVWGAAPQTRSDRRKDRVETNPEQLATASAQAEKmsTAMGRTTRVIGWYHSHPHITVLPSHVDVRT 112 Japanese cedar
KAH7300083    41 --------dgqvVALVWGAAPQTRSDRRKDRVETNPEQLAAASAQAERlsAETGKMTRVIGWYHSHPHITVLPSHVDVRT 112 Ceratopteris ri...
NP_001149966  40 --------skgaTALIWGASPQMRCERKKDRVEVNPDLLAAASAQADKmtATIKKTTRVIGWYHSHPHITVLPSHVDVRT 111 Zea mays
GAQ78756      41 --------dgraTARVFSAAPQTRSDRRKDRVETNPEQLAAAAAEAERlsVLSGRETRVIGWYHSHPHITVFPSHVDVAT 112 Klebsormidium n...
Feature 1                                                                                        
6GVW_B       143 QAMYQ-MMDQGFVGLIFSCFIEDkntktgRVLYTCFQSIqaqk------------------------------------- 184 house mouse
CAD2221339   134 QKQYQ-QLESGWVGLIFSVYHWDsnn-rnSSYIHCFQTGan--------------------------------------- 172 Angomonas deanei
EPY28641     146 QKQYQ-QMESGWVGLIFSLFHTDans-kgTCYIHCFQTGan--------------------------------------- 184 Strigomonas cul...
XP_001684250 180 QGRFQqYMESGWVGLIASVFNTEanitcgHCALHCFQAGlg--------------------------------------- 220 Leishmania majo...
KPI88898     175 QKEHQqHFESGWVGLIVSLFNSEasftrgHCALHCFQAGln--------------------------------------- 215 Leptomonas seym...
GBG88295     113 QGMYQ-MLDEGFVGLIFSCFSEDasl-tgRVQAIAFQSVdmrkraaqsrmthsssgrrtgqeggsgqsyqggrwvdgdsd 190 Chara braunii
XP_057825237 113 QGMYQ-LLDPGFIGVIFSCFSEDaqk-vgRIQVIAFQALdgkqrsltrlpiqvaplqvvaglesesgrtksgspipkstp 190 Japanese cedar
KAH7300083   113 QGMYQ-LLDAGFLGLIFSCFNEDskk-vgKIQATAFQVSsgwqqnklhnsfqqftgnaqdlssdsekdalrtaallsssp 190 Ceratopteris ri...
NP_001149966 112 QAMFQ-LLDTGFVGLIFSCFSEDaqk-vgKIQVTAFQSEggqqhalplaiapvidldsslsssdnaltshsalvegmeqd 189 Zea mays
GAQ78756     113 QGMYQ-MLDQGFIGLIFSCFSEDask-vgRIQVTAFQSApa--------------------------------------- 151 Klebsormidium n...
Feature 1                                                                                        
6GVW_B           --------------------------------------------------------------------------------     house mouse
CAD2221339       --------------------------------------------------------------------------------     Angomonas deanei
EPY28641         --------------------------------------------------------------------------------     Strigomonas cul...
XP_001684250     --------------------------------------------------------------------------------     Leishmania majo...
KPI88898         --------------------------------------------------------------------------------     Leptomonas seym...
GBG88295     191 diavnsksstknqqqdvaqdigrgd--daygsgprggvgvsgrnrdgasqgagsisysnavrssidmdgeaslsegleea 268 Chara braunii
XP_057825237 191 irpeiidldplnpkasvsaakitdktqtaldkffdhadaeisgrrdtmaqdstmpyhsgsgkiknddldsmdltsrmqea 270 Japanese cedar
KAH7300083   191 hln-----------------------------------------------svdvvnesissqpkvidledhfldagmqea 223 Ceratopteris ri...
NP_001149966 190 tgdsraskhnkawkrsldf---------------yshpdtnhstnyqpnentlalynpdntqeapvdpydsdmtqslqea 254 Zea mays
GAQ78756         --------------------------------------------------------------------------------     Klebsormidium n...
Feature 1                                                                                        
6GVW_B       185 ---------sseyERIEIPIHIVPhitigkv------------------------------------------------- 206 house mouse
CAD2221339   173 ------------dRHVKVPMVVCSqadlg--------------------------------------------------- 189 Angomonas deanei
EPY28641     185 ------------dRHVKVPLVICSpvdlglkt------------------------------------------------ 204 Strigomonas cul...
XP_001684250 221 ------------nEHVEVPMRIVPqsalfasldp---------------------------------------------- 242 Leishmania majo...
KPI88898     216 ------------gEHIPIPVHVVSeaelfasatp---------------------------------------------- 237 Leptomonas seym...
GBG88295     269 fhrssldisgadfVQKLVPLRVVQshvgvppe------------------------------------------------ 300 Chara braunii
XP_057825237 271 vhrshldisgaeyVRKEVPLQVVPghsiakvd------------------------------------------------ 302 Japanese cedar
KAH7300083   224 mhlsnlemsgaeyMRREVPFEVVPghtlvkan------------------------------------------------ 255 Ceratopteris ri...
NP_001149966 255 lhrstmdisgaeyRGKEVPLFVLPtryllkld------------------------------------------------ 286 Zea mays
GAQ78756     152 ------------nRRSPTPVPVRPaysrspsplpyargptsgasdfpplagdsparkaspapaapaasdssieeilpsda 219 Klebsormidium n...
Feature 1                                                                                        
6GVW_B           --------------------------------------------------------------------------------     house mouse
CAD2221339       --------------------------------------------------------------------------------     Angomonas deanei
EPY28641         --------------------------------------------------------------------------------     Strigomonas cul...
XP_001684250     --------------------------------------------------------------------------------     Leishmania majo...
KPI88898         --------------------------------------------------------------------------------     Leptomonas seym...
GBG88295         --------------------------------------------------------------------------------     Chara braunii
XP_057825237     --------------------------------------------------------------------------------     Japanese cedar
KAH7300083       --------------------------------------------------------------------------------     Ceratopteris ri...
NP_001149966     --------------------------------------------------------------------------------     Zea mays
GAQ78756     220 rmpsrikgggpsdaeeqdpsssrrpprppslevdpglppsggrstrnspspyypgesqqkgwsyaqaagprressqdsma 299 Klebsormidium n...
Feature 1                                                                                        
6GVW_B       207 -----------------------------------------clesaveLPKILCQEEQDAYRRIHSlthld--------- 236 house mouse
CAD2221339   190 --------------------------------------------lhtfLPSNICQMLDVMKREVSTsvdfvyeqtdgdst 225 Angomonas deanei
EPY28641     205 ----------------------------------------fvgsgqpqMLTVLMREIQSAVSHVRErsdndlm------- 237 Strigomonas cul...
XP_001684250 243 --------------------------------------igalpdttprLLQVLQQEVRDAVAATVResahdaa------- 277 Leishmania majo...
KPI88898     238 --------------------------------------lqalpdttpdLLRVLQREIVNGVRMVEEkakrnaa------- 272 Leptomonas seym...
GBG88295     301 ----------------------------------------lllspmvnLQRILFAEERAAFSQVMQlgardgk------- 333 Chara braunii
XP_057825237 303 ----------------------------------------fslssfvdLQHILFTEEKAAYNQAMShsmrdgk------- 335 Japanese cedar
KAH7300083   256 ----------------------------------------ihfssfvsLQRMLFDEEQAAYNQSLAqsrrddm------- 288 Ceratopteris ri...
NP_001149966 287 ----------------------------------------ttmtsycdMQRVLFEEEQSAYNQAMQqnicdgk------- 319 Zea mays
GAQ78756     300 sameeaaarsmedsrgasfvhkevplrvisgldvvgaspellldplvsLQRILFAEEKAAYRQAIAqssedgk------- 372 Klebsormidium n...
Feature 1                                                     
6GVW_B       237 ---svtkIHNGSVFT-KNLCSQMsav---sgPLLQWLEDRLEQNQ 274 house mouse
CAD2221339   226 aalaasgLQQYQMFC-LSRLMLEpsakfldkYSVPVLREEVKRLE 269 Angomonas deanei
EPY28641     238 amnaalgLQQAQLFT-FERLLLEpmakqlqwCSLPHLKSEVKRLE 281 Strigomonas culicis
XP_001684250 278 tsraargLAEVQLFQiDRLVAEPtrke-lvhCSLPLLRAEVARLE 321 Leishmania major strain Friedlin
KPI88898     273 atraargLADAQLYEvHGLVAEPirns-lqlCSLPALRAEVARLE 316 Leptomonas seymouri
GBG88295     334 -vhplavMHHSATYH-ASLCKLMeyc---liPVVSALMDRLQQNK 373 Chara braunii
XP_057825237 336 -ihplaaIHHSSQYQ-SSMCKLMeyc---lsPVISSLWDRLEENT 375 Japanese cedar
KAH7300083   289 -ihpltaIHHSATYE-ASLCKLMeyc---lsPALSSLWDRLEENN 328 Ceratopteris richardii
NP_001149966 320 -ihpltsIHCTSTYN-SSLCKLMeyc---lsPAVITLQDRLKENE 359 Zea mays
GAQ78756     373 -mhpiaaIHHSATYQ-ASLCKLMeyc---lsPVLTALWERQHQCQ 412 Klebsormidium nitens

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