Conserved Protein Domain Family
LARP_1

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cd08037: LARP_1 
La RNA-binding domain of La-related protein 1
This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Statistics
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PSSM-Id: 153406
View PSSM: cd08037
Aligned: 4 rows
Threshold Bit Score: 154.676
Threshold Setting Gi: 147900941
Created: 6-Aug-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:by similarity to other members of this family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #  ##    #  ## #                  ###                              
Q6PKG0        404 KDYIKRQIEYYFSVDNLERDFFLRRKMDadGFLPITLIASFHRVQALTTDiSLIFAALKDSkvVEIVDEKVRR 476  human
NP_001089363  323 KDYIKRQIEYYFSVDNLQRDFFLRRKMDneGFLPVALIAGFHRVQALTTDiELIIKALKDSkvVEIIDGKIRR 395  African clawed frog
AAH56513      123 KDYIKRQIEYYFSVDNLERDFFLRRKMDegGFLPVSLIASFHRVQALTTDvSLILQALKDSkvVDIIDMKMRC 195  zebrafish
XP_414577     527 KDYIKRQIEYYFSVDNLERDFFLRRKMDsdGFLPITLIASFHRVQALTTDiSLIIKALKDSkvVEIVDQKIRR 599  chicken

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