Conserved Protein Domain Family
LARP_1

cd08037: LARP_1

La RNA-binding domain of La-related protein 1

This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.

Links

Source:	cd08034
Taxonomy:	Euteleostomi
PubMed:	1 link

Protein:	Representatives
	Specific Protein
	Related Protein
	Related Structure
	Architectures
Superfamily:	cl02755

Statistics

PSSM-Id:	153406
Aligned:	4 rows
Threshold Bit Score:	154.676
Created:	6-Aug-2009
Updated:	2-Oct-2020

Structure

Conserved Features/Sites?
PubMed References ?

RNA binding

Feature 1:RNA binding site [nucleic acid binding site]

Evidence:

Comment:by similarity to other members of this family
Citation:PMID 16387655

Scroll to Sequence Alignment Display

Sequence Alignment

include consensus sequence

Format: Row Display: Color Bits: Type Selection:

Feature 1               #  ##    #  ## #                  ###                              
Q6PKG0        404 KDYIKRQIEYYFSVDNLERDFFLRRKMDadGFLPITLIASFHRVQALTTDiSLIFAALKDSkvVEIVDEKVRR 476  human
NP_001089363  323 KDYIKRQIEYYFSVDNLQRDFFLRRKMDneGFLPVALIAGFHRVQALTTDiELIIKALKDSkvVEIIDGKIRR 395  African clawed frog
AAH56513      123 KDYIKRQIEYYFSVDNLERDFFLRRKMDegGFLPVSLIASFHRVQALTTDvSLILQALKDSkvVDIIDMKMRC 195  zebrafish
XP_414577     527 KDYIKRQIEYYFSVDNLERDFFLRRKMDsdGFLPITLIASFHRVQALTTDiSLIIKALKDSkvVEIVDQKIRR 599  chicken

Citing CDD

Jiyao W et al.(2023). "The conserved domain database in 2023.", Nucleic Acids Res. 51(D1):D384-D388.

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Conserved Protein Domain FamilyLARP_1

Conserved Protein Domain Family
LARP_1