Conserved Protein Domain Family
LARP_6

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cd08033: LARP_6 
La RNA-binding domain of La-related protein 6
This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Statistics
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PSSM-Id: 153402
View PSSM: cd08033
Aligned: 17 rows
Threshold Bit Score: 123.932
Threshold Setting Gi: 198432981
Created: 16-Apr-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:by similarity to other members of this family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #  ##    #  ## #                    ###                                 
Q9BRS8        93 IKKLVDQIEFYFSDENLEKDAFLLKHVRrnklGYVSVKLLTSFKKVKHLTRDwRTTAHALKYSv-vLELNEdhRKVRR 169 human
XP_001637641  81 KARIKSQVEFYLSDDNLARDAFLLKHVRrnkeGYVNLKLITSFKKVKSLTKDyRVVAESLKDSt-mLSMNDenTKVKR 157 starlet sea anemone
EEC01616      37 TQRIVAQVEFYFSDENILRDSFLLKHVRrnreGYVSLKLMASFRKVKSLTKNwELVREALRASstrLEVNAegTKVRR 114 black-legged tick
AAX33496     282 AAEITDAVEFYFSNESILKDAFLLKHVRrnkeGFVSLKLVSSFKRVRQLTREwKVVGDAVRRKsrkIELNDvgTKVRR 359 fruit fly
XP_002130017 213 TNAIAKQIEYYLSDAYLMKDKYLLRQIRckkdGYVSIKLITSFKKVKKLTRDwAVVRSAIVRLsttVVVSSegLRIRR 290 Ciona intestinalis
XP_001766431 149 KDKILKQVEYYFSDANLSTDTYLMKFVKkdaeGFVPIPVVASFRKIKNLMKNhGVVAAALRKSt-rLVLSEdgKKVRR 225 Physcomitrella pa...
O80567       194 IQKIVNQVEYYFSDLNLATTDHLMRFICkdpeGYVPIHVVASFKKIKAVINNnSQLAAVLQNSa-kLFVSEdgKKVRR 270 thale cress
Q94LD0       114 AQKIIKQVEYQFSDTNLVANDFLMKIMNkdpeCYVPMSVISSWKKIKAMGVTnQLLVNALRTSs-kLVVSDdgKKVRR 190 Oryza sativa
Q9SEU9       148 RLKIVKQVEYQFTDMSLLANESISKHINkdpeGYVPISYIASTKKIKALTSHhHLVALALRSSs-kLVVSEdnKKVRR 224 rape
BAB11080      93 NQKIIRQVEYYFSDENLPTDKFLLNAMKrnkkGFVPISTIATFHKMKKLTRDhALIVSALKESs-fLVVSAdeKKVKR 169 thale cress

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