Conserved Protein Domain Family
LA_like_plant

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cd08030: LA_like_plant 
La-motif domain of plant proteins similar to the La autoantigen
This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Statistics
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PSSM-Id: 153399
View PSSM: cd08030
Aligned: 9 rows
Threshold Bit Score: 114.794
Threshold Setting Gi: 225430049
Created: 10-Sep-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
RNA binding
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:by similarity to other members of this family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #  ##       #  ##   #                        ###                         
AAG52256       9 TAKKLLTQVEFYFSd---SNLPTD--GFLNrevt----kskdGLVSLPLVCSFSRMRNLLGLGninredippriVEEVAN 79  thale cress
CAL50390      26 TKEKVVKQIEFYFCd---SNLPRD--SFLLeevaratrdghgGAVDLALIAGFSRMRDILAPYggke---nvknIERIAA 97  Ostreococcus tauri
XP_001417787  25 DGAKICRQVSFYFSd---SNIGRD--DYLLrevvkskreghdGAVELATIARFQKMRELLAPYggydn--fsamMPKVAE 97  Ostreococcus lu...
ACO68563      23 TKTKLLNQIEFYFSd---SNLPRD--KFLRetve----ndpdGFVDIALLVTFSRVRSLLGSYgrhc---dgdlVAAVAG 90  Micromonas sp. ...
XP_001697144   9 LKGKVVRQIEFYFSd---SNLPKD--KFLKeria----edpnGFVPLNVICAFQRMRDLIGVKsqspdavpadkLQQVAE 79  Chlamydomonas r...
XP_001773821  11 TTAKVLRQMEFYFSd---SNLPGD--AFLLknie----esddDMVELSLLCTFQKMRKHLGVNesdptkfpadkLAGVAE 81  Physcomitrella ...
O65529        10 TAKTVLRQVEFYFSd---SNLPID--DFLKktvt----esedGLVSLALICSFSKMRGYLKLGdskgddipedtIKAVAD 80  thale cress
XP_002281653   2 ASEDFLFLYTRSFSpkwyQFKPKYnsDNVVs----------eSMVSLALICSFSRMRSHLNLGdvkpedvsedtLKAVAE 71  wine grape
EEH59523      22 AKQKVKEQVEFYFSd---SNLPRD--KFLRetve----adpaGYVDISLLMTFSRLRTLLARVsnah---hvesAVDVAA 89  Micromonas pusi...
Feature 1                            
AAG52256      80 LLRTSd-FLKVSNnGQRIGR 98  thale cress
CAL50390      98 ALEGSa-LVEATD-GKRVKR 115 Ostreococcus tauri
XP_001417787  98 ALSQSd-IVEACEnGTRVKR 116 Ostreococcus lucimarinus CCE9901
ACO68563      91 ALDTSt-LLTVSCdKQRVRR 109 Micromonas sp. RCC299
XP_001697144  80 ALAGSe-SLEVDEsKTKVKR 98  Chlamydomonas reinhardtii
XP_001773821  82 VLRNKstFLRVSEdGKRVGR 101 Physcomitrella patens subsp. patens
O65529        81 TLRTSs-ALKISDdGKKVGR 99  thale cress
XP_002281653  72 ILRNSt-TLKVSEdGKKIGR 90  wine grape
EEH59523      90 LLETSk-VLAVSTdKRRVRR 108 Micromonas pusilla CCMP1545

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