1NZ8,2OUG,3H7H,3LPE


Conserved Protein Domain Family
NGN

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cd08000: NGN 
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N-Utilization Substance G (NusG) N-terminal (NGN) domain Superfamily
The N-Utilization Substance G (NusG) and its eukaryotic homolog Spt5 are involved in transcription elongation and termination. NusG contains an NGN domain at its N-terminus and Kyrpides Ouzounis and Woese (KOW) repeats at its C-terminus in bacteria and archaea. The eukaryotic ortholog, Spt5, is a large protein composed of an acidic N-terminus, an NGN domain, and multiple KOW motifs at its C-terminus. Spt5 forms a Spt4-Spt5 complex that is an essential RNA Polymerase II elongation factor. NusG was originally discovered as an N-dependent antitermination enhancing activity in Escherichia coli and has a variety of functions, such as being involved in RNA polymerase elongation and Rho-termination in bacteria. Orthologs of the NusG gene exist in all bacteria, but its functions and requirements are different. The diverse activities suggest that, after diverging from a common ancestor, NusG proteins became specialized in different bacteria.
Statistics
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PSSM-Id: 193574
Aligned: 28 rows
Threshold Bit Score: 54.6321
Created: 1-Oct-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1NZ8_A         3 EWYAVHTl--vGQEEKAKANLEKRikafg---lqdkiFQVLIPteevvelreg-gkkevvrkkLFPGYLFIQMDLgdeee 76  Thermus thermop...
3H7H_B         7 NLWTVKCk--iGEERATAISLMRKfiayqftdtplqiKSVVAPe-------------------HVKGYIYVEAYKqt--- 62  human
3LPE_A        11 MIFAVRTm--vGQEKNIAGLMASRaeke-----qldvYSILASe-------------------SLKGYVLVEAETkg--- 61  Methanocaldococ...
XP_002276763 100 QWWVVRVsrvsGQESAERLARSLArnfp------didFKVYVPsvqvkrklkn-gsisvkpkpLFPGCVFLRCVLnk--- 169 wine grape
YP_003182233   1 MWYVVQTv--aGREFAVCRLIESLved-------dvlQECFVPryevqkqfr--gqwrtctatLFPGYLIVVTDRvd--- 66  Eggerthella len...
ABR60500      51 PWFALRVw--tGREKTVEKSLDIMa------------VRSLVPmrkgpdlrrrgrviegqmmpVIHGYVLVQMMAls--- 113 Sinorhizobium m...
YP_001370855  50 PWLVLQVm--sGRELSVREALGKEn------------IEVLVPmkmgpkirrqgreipakkqpVMNGYVLARCMIsn--- 112 Ochrobactrum an...
NP_353481     14 EWFVVETk--hKAEKAVEDALRKAg------------VKVFLPletigetvvrgriipavsrpLLPGYVLVNIVYsp--- 76  Agrobacterium t...
ZP_07588427   49 RWYCLLVk--kGREFDVENSLREAn------------VEAFMPrervvrvrh--grifesdvpYFPSYMLVRCVPsp--- 109 Sinorhizobium m...
ZP_07600793   54 SWIVLQTm--tGREKIVENILGQAg------------VEALVPtkkapdvrrrgriiegqerpVMRGYVMVHAVLsp--- 116 Sinorhizobium m...
1NZ8_A        77 pneaWEVVRGTPGITGFVgag--------mrpVPLSPDEVRHIL 112 Thermus thermophilus
3H7H_B        63 --hvKQAIEGVGNLRLGYwn-----------qQMVPIKEMTDVL 93  human
3LPE_A        62 --dvEELIKGMPRVRGIVp-------------GTIAIEEIEPLL 90  Methanocaldococcus jannaschii
XP_002276763 170 --etHDFIRECDGIGGFVgskvgntkrqinkpRPVSVDDIEAIF 211 wine grape
YP_003182233  67 --elESQLRRVPAFAWVLsnd--------ggfVPLERDEVAWID 100 Eggerthella lenta DSM 2243
ABR60500     114 --eyLAGLLGVEHVIDVLggc--------erpMRLSDKEVNRFN 147 Sinorhizobium medicae WSM419
YP_001370855 113 --ecLAGLLSFENVVSILggy--------etpFLVSAEKVFVFR 146 Ochrobactrum anthropi ATCC 49188
NP_353481     77 --aaVCGIARLEGVAGFVggm--------vhpHRVSDEEMNRFK 110 Agrobacterium tumefaciens str. C58
ZP_07588427  110 --eaFHGLRRHRNVIDIVgga--------sgyHIVRDENVAMFK 143 Sinorhizobium meliloti BL225C
ZP_07600793  117 --aaLNGLRRVEHVVGIVgga--------erpWCADAQSVNMIK 150 Sinorhizobium meliloti AK83
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