1RM1


Conserved Protein Domain Family
TFIIA_alpha_beta_like

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cd07976: TFIIA_alpha_beta_like 
Click on image for an interactive view with Cn3D
Precursor of TFIIA alpha and beta subunits and similar proteins
Transcription factor II A (TFIIA) is one of the general transcription factors for RNA polymerase II. TFIIA increases the affinity of TATA-binding protein (TBP) for DNA in order to assemble the initiation complex. TFIIA also functions as an activator during development and differentiation, and is involved in transcription from TATA-less promoters. TFIIA is composed of more than one subunit in various organisms. Mammalian TFIIA large subunits (TFIIA alpha and beta) and the smaller subunit (TFIIA gamma) form a heterotrimer. TFIIA alpha and beta are encoded by a single gene (TFIIA_alpha_beta), its protein product is post-translationally processed and cleaved. TOA1 and TOA2 are the two subunits of Yeast TFIIA which correspond to Mammalian TFIIA_alpha_beta and TFIIA gamma, respectively. TOA1 and TOA2 form a heterodimeric protein complex. TFIIA_alpha_beta alone is sufficient for transcription in early embryogenesis, but the cleaved forms, TFIIA alpha and TFIIA beta, represent the vast majority of TFIIA in most differentiated cells. The exact functional differences between cleaved and uncleaved forms are not yet clear. This model also contains paralogs of the canonical TFIIA_alpha_beta, such as the human ALF, which may be involved in gametogenesis and early embryogenesis (and is also subject to proteolytic cleavage).
Statistics
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PSSM-Id: 199899
Aligned: 84 rows
Threshold Bit Score: 76.4091
Created: 1-Oct-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 52 residues -Click on image for an interactive view with Cn3D
Feature 1:TFIIA subunit interface [polypeptide binding site]
Evidence:
  • Structure:1RM1: Interface between yeast TFIIA subunits TOA1 and TOA2, contacts at 4.0 A
  • Comment:TFIIA is composed of more than one subunit
  • Comment:Yeast TFIIA is a heterodimer, the two subunits are known as TOA1 (corresponds to human TFIIA_alpha_beta) and TOA2 (corresponds to human TFIIA_gamma)
  • Citation:PMID 8610010
  • Citation:PMID 8629014

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ### ##  ##  ##   #    #        #  ##  ##  ##  # #                             
1RM1_C         6 ASRVYEIIVESVVNEVRedFENAGI-----DEQTLQDLKNIWQKKLTETKVTTFSWDNQFNegningvqndlnfnlatpg 80  baker's yeast
BAJ91198       6 VPAVYRTIIDDVIANVRadFDEFGV-----EEDILALLQQSWEYKLVASNVANFEPPTQPAastsrqpqpapppipplpk 80  domesticated ba...
XP_003029294  29 EPTIYRTVIDDVIANIKpeFDEYGV-----TQEVLDQLQDKWEQKVINSRVADFDNNVPPPpapvpaptpavappplqqa 103 Schizophyllum c...
EFW41532       5 TVAVYERIINLTIDGMAhaFAQAGI-----DASVTDEIKQLWHEKVNATTALMPIEPAMAAqdhlnlplwidpyrngngg 79  Capsaspora owcz...
Q8SW23         1 MLKIYEDIINEVISRLEq-VEDEVSi----GKSAIHELRNEWRERLIEYTQSEWDGERMRRrdgeqgyhgyerlsegpah 75  Encephalitozoon...
XP_001712527  10 VNEVYSHVINVTVESLRk-HLEKSKkkkfsRFDIPNELKSRWQARINCLFYSLESSWLKIQetstkfnefpkkierpiyp 88  Hemiselmis ande...
XP_003239911  11 VNDVYSYIIDLTVEALKk-YIKETKks-knCYDIPLELKERWKKRMNCVLESSTGLWSKFQeytikhekysryyvtfssn 88  Cryptomonas par...
EGD75055      14 ARQVYLDVVDQVIANVKaaFLDEGS-----DEQVLEDLRSLWLANLYEQRTIDTGLHQVDGagddgddddddddgndggq 88  Salpingoeca sp....
XP_002995812   5 MSRIYTDLIEEVLTKLEleGEPEGI-----GRNLIFDIQNGWRRNIRDWYENASNEDKHTFedkrmaynsttdg------ 73  Nosema ceranae ...
XP_002649557   7 NRKLAYDIIEEVCKEVM--NDNKILl---nDSNIVYSLREDWCNVFEHLSVNNNFHESYSEdydyddvtekmgsgtefs- 80  Enterocytozoon ...
Feature 1                                                                                        
1RM1_C        81 vnssefnikeentgneglilpninsnnniphsgetnintntveatnnsgatlntntsgntnadvtsqpki---------- 150 baker's yeast
BAJ91198      81 aepnpshqqmlppmgggpglnlnlgmpglalpaprpagvpsagsaqqygqqvfghqqaqqqqqqqqqqqqqqagqqqwng 160 domesticated ba...
XP_003029294 104 tqhhppmpqlysmfpynyapppgpqvqpqvkteptdptrgypaslftlpkpgvpggtlpalyaparpqt----------- 172 Schizophyllum c...
EFW41532      80 adplpqssasssttvataaagaprtpapptaslaaplpvrqtqqtqppvshtpastqqqqpqtapvatpggplpsfdaat 159 Capsaspora owcz...
Q8SW23        76 afggkptta----------------------------------------------------------------------- 84  Encephalitozoon...
XP_001712527  89 lsvinfplvcnlswdffqfstvniekisgfkswvwnclisqminegvfpsqsmkakikrkkktp---------------- 152 Hemiselmis ande...
XP_003239911  89 tlsffpvvcklswyifrnfsgqeknqgfkswiwncligkvigdfsyqqvvifiykntcslk------------------- 149 Cryptomonas par...
EGD75055      89 ptpaqeqpqpqpqqpdasgseprdtpetqt-------------------------------------------------- 118 Salpingoeca sp....
XP_002995812     --------------------------------------------------------------------------------     Nosema ceranae ...
XP_002649557     --------------------------------------------------------------------------------     Enterocytozoon ...
Feature 1                                                                                        
1RM1_C       151 ---------------------------------------------evkpeieltinnanittveniddesekkddeekee 185 baker's yeast
BAJ91198     161 glrggsad-------------------dkgkgparlrggagpgerdhyavisgsdssdddsdsgtssiggspmvpvatpa 221 domesticated ba...
XP_003029294 173 -----------------------------------------------gqppqqpripqadgpsaqpprpthpslqptgpp 205 Schizophyllum c...
EFW41532     160 pagatpaalpsfsdaslsyphhhqhhhngdsnrmfqpippdtpavfanpltyatpaphvpgaymdpatpfvpvastpahd 239 Capsaspora owcz...
Q8SW23           --------------------------------------------------------------------------------     Encephalitozoon...
XP_001712527 153 ---------------------------------------------------lekffsspinifkyeknwfnkygsfleen 181 Hemiselmis ande...
XP_003239911 150 ------------------------------------------------------tqhdvilihlkhkkntfnryklvqvk 175 Cryptomonas par...
EGD75055         --------------------------------------------------------------------------------     Salpingoeca sp....
XP_002995812     --------------------------------------------------------------------------------     Nosema ceranae ...
XP_002649557     --------------------------------------------------------------------------------     Enterocytozoon ...
Feature 1                                                               ######### #      # #   ##
1RM1_C       186 dvektrkekeqieqvklqakkekrsalldtdevgselddsdddylisegeedgpDENLMLCLYDKVTRTKARWKCSLKDG 265 baker's yeast
BAJ91198     222 papatarpapaaqtlprqanefgifpgdeeinsdlddsddeidnderkedgeeaDENIVFCVYDKVNRVKNKWKMVFRDG 301 domesticated ba...
XP_003029294 206 rppqvarpvsvptpvaappprpppeddeeinsdlddsdsdgeqngeeqatsgaaDGDIVFCTYDKVQRVKNKWKCVLKDG 285 Schizophyllum c...
EFW41532     240 gsapsatapeeaaassaaapapaasdeaappaqeykddellsdsdeeeapeetgEKNMMLCTAEKVTRNRNRWKTTLRGG 319 Capsaspora owcz...
Q8SW23        85 ---------------------------kdpgmfedygssdvssgdseiigtkgsTGNCMVCLYVKVNMSKGKWKCTFKQG 137 Encephalitozoon...
XP_001712527 182 ldfffdpkknstlaekknfqeekdqnfsnlidslgseldeelesneiggveekiPKNFILAITEKVYRRNTKWRITLKDG 261 Hemiselmis ande...
XP_003239911 176 kidkckkfkntavssskksvcsiyrfthfresestdseynninnqptnkhkednSINFILSIVNKIYRRNARWKVILKDG 255 Cryptomonas par...
EGD75055     119 ------stastggqppapaeqeqpsrndesvsiddddddddedddddddeemgaRPNHIICQHERINHSKNVWKAALRNC 192 Salpingoeca sp....
XP_002995812  74 -----------------------------------------yissdeeyemmedTSNFLMCMYVKVSRTKCKYKCNFKQG 112 Nosema ceranae ...
XP_002649557  81 -------------------------------------deseydedsdikkaekyTQSYFICLFVKVIKSKGKWKCIFKDG 123 Enterocytozoon ...
Feature 1        #####   #############
1RM1_C       266 VVTIN-RNDYTFQKAQVEAEW 285 baker's yeast
BAJ91198     302 MAKVN-GKDYLFAKATCDVEW 321 domesticated barley
XP_003029294 286 VIHMN-GRDYLFSKCTGSSSV 305 Schizophyllum commune H4-8
EFW41532     320 IVTIR-GRDYVFRTATGEFTF 339 Capsaspora owczarzaki ATCC 30864
Q8SW23       138 FISIG-NIDFVFNSAQGELEW 157 Encephalitozoon cuniculi GB-M1
XP_001712527 262 ILHLN-EKDLLFNSCKCEFFW 281 Hemiselmis andersenii
XP_003239911 256 ILHVN-NRDLLFSSCKCEFFW 275 Cryptomonas paramecium
EGD75055     193 VVHVD-GQDFVFGAMKLDYIW 212 Salpingoeca sp. ATCC50818
XP_002995812 113 FVNLG-NVDFAFANAQGELEW 132 Nosema ceranae BRL01
XP_002649557 124 FINIDgREDQPFNNASGELEW 144 Enterocytozoon bieneusi H348

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