4AGU,4AAA


Conserved Protein Domain Family
STKc_CDKL

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cd07833: STKc_CDKL 
Click on image for an interactive view with Cn3D
Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases
STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270827
Aligned: 11 rows
Threshold Bit Score: 457.164
Created: 1-Aug-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:4AGU: Human CDKL1 binds inhibitor; contacts at 4A.
  • Structure:4AAA: Human CDKL2 binds CDK1/2 inhibitor; contacts at 4A.
  • Comment:also based on structures of other CMGC kinases bound with ATP or ATP analogs
  • Citation:PMID 9739089

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #####   #              # #                                              
4AGU_A          3 EKYEKIGkIGEGSYGVVFKCRNRDt--gQIVAIKKFLEsed------------------dpvIKKIALREIRMLKQLk-H 61   human
4AAA_A         25 EKYENLGlVGEGSYGMVMKCRNKDt--gRIVAIKKFLEsdd------------------dkmVKKIAMREIKLLKQLr-H 83   human
O76039         11 NKFEILGvVGEGAYGVVLKCRHKEt--hEIVAIKKFKDsee------------------neeVKETTLRELKMLRTLk-Q 69   human
AAG49589        2 DAYETLGmLGEGTYGVVVKARHRAt--sRIVAIKKYKQaed------------------ddhVRKTSLREVRVLKQLr-H 60   Trypanosoma b...
XP_667043      11 NRYKTICeIGEGAFGVVFKCMDLVt--nEIVALKEFKTiysdenensyvtknsangkvntniSHNKILREIATLRRLygQ 88   Cryptosporidi...
CAK68918        2 NKYEVLGvVGEGAYGVVLKCKNKEt--nEIVAIKKFKEted------------------neiVKKSIQREVKVLRLLr-H 60   Paramecium te...
XP_001703331    1 QKYEFLSrTGEGAYGSVWRARDKNt--gMMVAVKKMKDvpt------------------teeVREIAMREVRVLQLAk-H 59   Chlamydomonas...
XP_001703541 1460 GKYEVQHvVGEGAYGMVMKCKVRAteppQWVAIKEFKIedsdp---------------daedVKRTSLREVSVLEALh-H 1523 Chlamydomonas...
EEE22847        2 NKYEKLElVGEGAYGVVLKCRRKDt--gELVAIKTFKGnee------------------stnVKKTIARELNALTHLr-H 60   Toxoplasma go...
EEH54868        2 NKYEVVGvVGEGAYGVVLKCRNKEt--gDVVAVKKFKArrgd----------------ddeaVKKTTLREVKVLRSLe-H 62   Micromonas pu...
XP_001689794    2 QNYEYVStIGEGAYGEVWQCREKAt--gRIVAVKGFKAahe------------------dkdIMRLAVREVKVLQAVs-H 60   Chlamydomonas...
Feature 1            #                ####  #                                       # # ## #      
4AGU_A         62 PNLVNLLEVFRr-kRRLHLVFEYCDHTVLHELDRyqrGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITk--- 137  human
4AAA_A         84 ENLVNLLEVCKk-kKRWYLVFEFVDHTILDDLELfpnGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSq--- 159  human
O76039         70 ENIVELKEAFRr-rGKLYLVFEYVEKNMLELLEEmpnGVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISh--- 145  human
AAG49589       61 PNVIALLDVFRr-dGKLYLVFEYVENTILQLIEEkkyGLSPDEVRRYTFQLLNGVSYCHAHNIIHRDVKPENILVSr--- 136  Trypanosoma b...
XP_667043      89 KNIIQLKDFFLh-eNRYYLSLEYFPQTLLQYLEKspkGLPIEIIRSSIYQLLTALKKCHSMGIIHRDVKPENILIKeiek 167  Cryptosporidi...
CAK68918       61 LNIVELKEAFKr-kGRIYLVFEYVERNLLEVLEAspsGLEPLYIKKTIFQLLKAIYCCHQHDIVHRDIKPENLLISn--- 136  Paramecium te...
XP_001703331   60 VNIVNLLEAYKsqsGRLYLVFEYVERTLLQELKAnrgGMPPAAVKSLTWQLLQSLSYLHRKQIIHRDVKPSNILITe--- 136  Chlamydomonas...
XP_001703541 1524 PHVVGFVDKFMv-gDRLFIVMEFLPCNLLELLEAqpgGMDRDAVRLIMFQLCSAIAFIHSKKMVYRDIKPENLLVDe--- 1599 Chlamydomonas...
EEE22847       61 ENIVALKEAFRw-kGKLHLVFEYIHRNLLELLEAspaGLDPETVRLCIWQLVKALSYCHRNDIVHRDVKPENLLVNlk-- 137  Toxoplasma go...
EEH54868       63 ENVVSLKEAFRr-kGKLYLVFEYVEKNLLEVLEErpgGLSPDTTRRYVWQLARAVAHCHRLGIVHRDIKPENLLVNprs- 140  Micromonas pu...
XP_001689794   61 ENLVRLINAFKsksGRVYMVFEFAGSSVHDQLDRyptGLGAAATKLLSWQLLQAAAYLHGNKVLHRDIKPANILVDs--- 137  Chlamydomonas...
Feature 1                  #                                                                      
4AGU_A        138 --hSVIKLCDFGFARLLTGPSd---------------------YYDDEVATRWYRSPELLVGdt-----------qYGPP 183  human
4AAA_A        160 --sGVVKLCDFGFARTLAAPGe---------------------VYDDEVATRWYRAPELLVGdv-----------kYGKA 205  human
O76039        146 --nDVLKLCDFGFARNLSEGNn--------------------aNYTEYVATRWYRSPELLLGa------------pYGKS 191  human
AAG49589      137 --dGVLKLCDFGFARQLSCRG----------------------NYTEYVATRWYRAPELLVGdv-----------sYGKA 181  Trypanosoma b...
XP_667043     168 nmnLELKLCDFGFARFIQQNKsysnqfkdslsksvdslcvasrPLTSYVSTRWYRAPELLVKst-----------eYGPG 236  Cryptosporidi...
CAK68918      137 --aSVLKLCDFGFARSLTAQTq---------------------DLTDYVATRWYRAPELLLSys-----------nYDKG 182  Paramecium te...
XP_001703331  137 --sGVLKICDFGFARAMTSSSad-------------------pAYTTYVVTRWYRAPEVLVGd------------nYGPP 183  Chlamydomonas...
XP_001703541 1600 --hGTVKLCDFGFARYLPGRPt--------------------sHLTDYVATRWYRAPELLLGppyrdaqgkhiqfmYGPP 1657 Chlamydomonas...
EEE22847      138 --tRKLKLCDFGFARQLHESAa--------------------vPLTDYVATRWYRSPELLLCdp-----------eYGKP 184  Toxoplasma go...
EEH54868      141 draNALKLCDFGFARPLRAKAgra-----------------asPLTDYVATRWYRAPELLLGst-----------sYGFE 192  Micromonas pu...
XP_001689794  138 --sGVAKLCDFGFARAVRCGPre------------------aqRCTSYVVTRWYRAPEVLVSd------------nYGAA 185  Chlamydomonas...
Feature 1                                                                                         
4AGU_A        184 VDVWAIGCVFAELLSgVPLWPGksDVDQLYLIRKTLGDLIP-RHQQVFS-------------------TNQYFSGv---- 239  human
4AAA_A        206 VDVWAIGCLVTEMFMgEPLFPGdsDIDQLYHIMMCLGNLIP-RHQELFN-------------------KNPVFAGv---- 261  human
O76039        192 VDMWSVGCILGELSDgQPLFPGesEIDQLFTIQKVLGPLPS-EQMKLFY-------------------SNPRFHGl---- 247  human
AAG49589      182 VDVWAIGCVFSELSDgQPLFPGdsDLDQLSLIMRACGPVPQ-QMVSTFE-------------------HNALYRRv---- 237  Trypanosoma b...
XP_667043     237 IDVWAVGCIMAELIDgEPLFPGtsDIDQLYLIRNTIGKLDSkSQGILESdkrlydaykkhfyngfisgSNSRYNTelsqs 316  Cryptosporidi...
CAK68918      183 VDMWAIGCLLCELTDgNPLFPGenEMDQLYLIQKMLGPLTP-SQQETFS-------------------KNPRFLGm---- 238  Paramecium te...
XP_001703331  184 VDVWALGCIFAEMLAgRPLFPGknHHDQLWLILKCLGTMTE-RQLELLD-------------------SDPQFACf---- 239  Chlamydomonas...
XP_001703541 1658 VDMWAIGCLMGELLDgEPLFAGdsDLDQLYRVQQILGPMAP-AHQYLFY-------------------ANPHNTG----- 1712 Chlamydomonas...
EEE22847      185 VDMWAVGCIMGELIDgRPLFPGdnEVDQLYKIQLVLGPLLP-QHMEMFR-------------------QNSRFAGl---- 240  Toxoplasma go...
EEH54868      193 VDAWAIGCIMGELIDgQPLFPGesDVDQLYVIQKAMGGLTK-SQTSDFL-------------------RNKRFAGl---- 248  Micromonas pu...
XP_001689794  186 ADIWSIGCTIAEIATgRALFPGrcSTDQLWRIMRCLGPLPP-AHTARLL-------------------SDPRLRG----- 240  Chlamydomonas...
Feature 1                                                            
4AGU_A        240 -KIPDPEDMEPLELKFPNi-SYPALGLLKGCLHMDPTERLTCEQLLHHPYF 288  human
4AAA_A        262 -RLPEIKEREPLERRYPKl-SEVVIDLAKKCLHIDPDKRPFCAELLHHDFF 310  human
O76039        248 -RFPAVNHPQSLERRYLGilNSVLLDLMKNLLKLDPADRYLTEQCLNHPTF 297  human
AAG49589      238 -TFPSVDVEETLQQRFPTa-ASPWLEFLTSCLRMDPVERPSCTALMSMAYF 286  Trypanosoma brucei
XP_667043     317 sAVIPPYQIISIKERYEKkvDLIALDFLQKSLTIDPKMRPDCQELLLHPFF 367  Cryptosporidium hominis TU502
CAK68918      239 -KFPEISKPETLEQRYLCklPKRAINFVKGLLKMEPSERLTCRQALKHQYF 288  Paramecium tetraurelia
XP_001703331  240 -RLPTQSEIEPLEHRLSAl-SGPAMQFLRACLNPDPKQRATADELLAMPYF 288  Chlamydomonas reinhardtii
XP_001703541 1713 -IVFNIKQPLSLAARYRGkvSDLELDFLAGLLEMDPEKRLTGDQCLQHPYL 1762 Chlamydomonas reinhardtii
EEE22847      241 -AFPELPPRETLLLRYRNkfDRTAIDFLSKLLCMDPKARLTAKMALQHPYF 290  Toxoplasma gondii GT1
EEH54868      249 -KFPDMSTPDGIERRYAGkcSNKGMAFMKATLAMDPKERLTWHGMLTHPYF 298  Micromonas pusilla CCMP1545
XP_001689794  241 -ATIPPLHKDLRQRLPEV--EPRLLELVAACLRLDPAARPTAAELLQMPYF 288  Chlamydomonas reinhardtii

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