1X8G,3SD9,2YZ3,2M5D,1X8I,1BC2,2FHX


Conserved Protein Domain Family
MBL-B1-B2-like

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cd07707: MBL-B1-B2-like 
Click on image for an interactive view with Cn3D
metallo-beta-lactamases; subclasses B1 and B2 and related proteins; MBL-fold metallo-hydrolase domain
MBLs (class B of the Ambler beta-lactamase classification) are a diverse group of metallo-enzymes that are capable of catalyzing the hydrolysis of a wide range of beta-lactam antibiotics. MBLs have been divided into three subclasses B1, B2 and B3, based on sequence/structural relationships and substrates, with the B1 and B2 MBLs being most closely related to each other. Subclass B1 enzymes are most active with two zinc ions bound in the active site, and have a broad-spectrum substrate profile. B1 MBls include chromosomally-encoded MBLs such as Bacillus cereus BcII, Bacteroides fragilis CcrA, and Elizabethkingia meningoseptica (Chryseobacterium meningosepticum) BlaB and acquired MBLs including IMP-1, VIM-1, VIM-2, GIM-1, NDM-1 and FIM-1. B2 MBLs have a narrow substrate profile that includes carbapenems, and they are active with one zinc ion bound in the Asp-Cys-His site, binding of a second zinc ion in the modified 3H site (Asn-His-His) inhibits catalysis. B2 MBLs include Aeromonas hydrophyla CphA, Aeromonas veronii ImiS, and Serratia fonticola Sfh-I.
Statistics
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PSSM-Id: 293793
Aligned: 7 rows
Threshold Bit Score: 277.503
Created: 24-Jun-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:2M5D: Bacillus cereus BcII (subclass B1) binds the broad spectrum inhibitor R-thiomandelic acid and two zinc ions
  • Structure:2YZ3: Pseudomonas aeruginosa VIM-2 (subclass B1) binds (S)-2-(mercaptomethyl)-phenylpentanoic acid (M5P) and two zinc ions
  • Structure:1X8I: Aeromonas hydrophila CphA (subclass B2) binds the antibiotic Biapenem and a zinc ion in the Asp-Cys-His site
  • Comment:binding of a second zinc ion in the modified 3H site (Asn-His-His) inhibits catalysis

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            #                    #                          # ###    
1X8G_A      3 MSLTQVSgPVYVVEDNYY-----VQENSMVYFGa-kGVTVVGATWtPDTARELHKLIKRVsrKPVLEVINTNYHTDRAGG 76  Aeromonas hydrophila
3SD9_A      6 LTLTHFKgPLYIVEDKEY-----VQENSMVYIGt-dGITIIGATWtPETAETLYKEIRKVspLPINEVINTNYHTDRAGG 79  Serratia fonticola
2YZ3_A     44 VRLYQIAdGVWSHIATQSfdgavYPSNGLIVRDg-dELLLIDTAWgAKNTAALLAEIEKQigLPVTRAVSTHFHDDRVGG 122 Pseudomonas putida
2M5D_A     16 ISISQLNkNVWVHTELGSfngeaVPSNGLVLNTs-kGLVLVDSSWdDKLTKELIEMVEKKfqKRVTDVIITHAHADRIGG 94  Bacillus cereus
1X8I_A      3 MSLTQVSgPVYVVEDNYY-----VQENSMVYFGa-kGVTVVGATWtPDTARELHKLIKRVsrKPVLEVINTNYHTDRAGG 76  Aeromonas hydrophila
1BC2_A     16 ISISQLNkNVWVHTELGSfngeaVPSNGLVLNTs-kGLVLVDSSWdDKLTKELIEMVEKKfqKRVTDVIITHAHADRIGG 94  Bacillus cereus
2FHX_A     10 LTATKIDsDVFVVTDRDF-----YSSNVLVAKMldgTVVIVSSPFeNLGTQTLMDWVAKTmkPKKVVAINTHFHLDGTGG 84  Pseudomonas aerugi...
Feature 1                                                                                     
1X8G_A     77 NAYWKSiGAKVVSTRQTRDLMKSdwaeivaftr------kglpeypdlpLVLPNVVHDg------DFTLQe--gKVRAFY 142 Aeromonas hydrophila
3SD9_A     80 NAYWKTlGAKIVATQMTYDLQKSqwgsivnftr------qgnnkypnleKSLPDTVFPg------DFNLQn--gSIRAMY 145 Serratia fonticola
2YZ3_A    123 VDVLRAaGVATYASPSTRRLAEVe------------------------gNEIPTHSLEglsssgdAVRFG----PVELFY 174 Pseudomonas putida
2M5D_A     95 IKTLKErGIKAHSTALTAELAKKn------------------------gYEEPLGDLQt------VTNLKfgnmKVETFY 144 Bacillus cereus
1X8I_A     77 NAYWKSiGAKVVSTRQTRDLMKSdwaeivaftr------kglpeypdlpLVLPNVVHDg------DFTLQe--gKVRAFY 142 Aeromonas hydrophila
1BC2_A     95 IKTLKErGIKAHSTALTAELAKKn------------------------gYEEPLGDLQt------VTNLKfgnmKVETFY 144 Bacillus cereus
2FHX_A     85 NEIYKKmGAETWSSDLTKQLRLEenkkdrikaaefyknedlkrrilsshPVPADNVFDlk----qGKVFSfsneLVEVSF 160 Pseudomonas aerugi...
Feature 1         #                  #  #       ##                                 #          
1X8G_A    143 AGPAHTPDGIFVYFPDEQVLYGNCILKe----kLGNLSFADVKAYPQTLERLKAMkl----piKTVIGGHDsPLHGPELI 214 Aeromonas hydrophila
3SD9_A    146 LGEAHTKDGIFVYFPAERVLYGNCILKe----nLGNMSFANRTEYPKTLEKLKGLieqgelkvDSIIAGHDtPIHDVGLI 221 Serratia fonticola
2YZ3_A    175 PGAAHSTDNLVVYVPSASVLYGGCAIYelsrtsAGNVADADLAEWPTSIERIQQHyp----eaQFVIPGHG-LPGGLDLL 249 Pseudomonas putida
2M5D_A    145 PGKGHTEDNIVVWLPQYNILVGGCLVKstsakdLGNVADAYVNEWSTSIENVLKRyr----niNAVVPGHG-EVGDKGLL 219 Bacillus cereus
1X8I_A    143 AGPAHTPDGIFVYFPDEQVLYGGCILKe----kLGNLSFADVKAYPQTLERLKAMkl----piKTVIGGHDsPLHGPELI 214 Aeromonas hydrophila
1BC2_A    145 PGKGHTEDNIVVWLPQYNILVGGCLVKstsakdLGNVADAYVNEWSTSIENVLKRyr----niNAVVPGHG-EVGDKGLL 219 Bacillus cereus
2FHX_A    161 PGPAHSPDNVVVYFPKKKLLFGGXMIKpk---eLGYLGDANVKAWPDSARRLKKFd------aKIVIPGHG-EWGGPEMV 230 Pseudomonas aerugi...
Feature 1            
1X8G_A    215 DHYEALI 221 Aeromonas hydrophila
3SD9_A    222 DHYLTLL 228 Serratia fonticola
2YZ3_A    250 KHTTNVV 256 Pseudomonas putida
2M5D_A    220 LHTLDLL 226 Bacillus cereus
1X8I_A    215 DHYEALI 221 Aeromonas hydrophila
1BC2_A    220 LHTLDLL 226 Bacillus cereus
2FHX_A    231 NKTIKVA 237 Pseudomonas aeruginosa

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