3QGM,4JDP


Conserved Protein Domain Family
HAD_Pase_UmpH-like

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cd07531: HAD_Pase_UmpH-like 
Click on image for an interactive view with Cn3D
UmpH/NagD family phosphatase, similar to Bacillus AraL phosphatase, a putative sugar phosphatase
Bacillus subtilis AraL is a phosphatase displaying activity towards different sugar phosphate substrates; it is encoded by the arabinose metabolic operon araABDLMNPQ-abfA and may play a role in the dephosphorylation of substrates related to l-arabinose metabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Statistics
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PSSM-Id: 319833
Aligned: 4 rows
Threshold Bit Score: 379.221
Created: 11-Jun-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:based on various UmpH/NagD family phosphatases and on other haloacid dehalogenase superfamily members with structure
  • Structure:3QGM: Archaeoglobus fulgidus P-nitrophenyl phosphatase binds Ca2+ in the active site
  • Structure:4JDP: Archaeoglobus fulgidus P-nitrophenyl phosphatase binds chloride ions and Mg2+ in the active site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #####                           ####       #  #                            
3QGM_A         9 KGYIIDIDGVIGKSvtPIPEGVEGVKKLKelGKKIIFVSNNStrsRRILLERLRSFGLev-gEDEILVATyATARFIAre 87  Archaeoglobus f...
YP_001636398   8 DGYIFDLDGTIYLGdiLLPGAAELLHTLRreGRRVTFLSNNPtktRRQYAERLQRLGIaa-dEHEIVNSSaVMVEWLLan 86  Chloroflexus au...
P94526        14 AGILIDLDGTVFRGneLIEGAREAIKTLRrmGKKIVFLSNRGnisRAMCRKKLLGAGIetdvNDIVLSSS-VTAAFLKkh 92  Bacillus subtil...
4JDP_A        28 KGYIIDIDGVIGKSvtPIPEGVEGVKKLKelGKKIIFVSNNStrsRRILLERLRSFGLev-gEDEILVATyATARFIAre 106 Archaeoglobus f...
Feature 1                                                                         # #           #
3QGM_A        88 kpnaKVFTTGEEGLIEELRLAGleivd--ydeaEYLVVGsnrkinFELXTKALRaclrgIRYIATNPDRIFPaedgpIPG 165 Archaeoglobus f...
YP_001636398  87 apgaSLFVVGEAPLIGELEAAGfplse-kpgeiAFVVASfdrtftYRKLQIAFDairagARLVATNPDRFCPvpgggEPD 165 Chloroflexus au...
P94526        93 yrfsKVWVLGEQGLVDELRLAGvqnasepkeadWLVISLhet-ltYDDLNQAFQaaaggARIIATNKDRSFPnedgnAID 171 Bacillus subtil...
4JDP_A       107 kpnaKVFTTGEEGLIEELRLAGleivd--ydeaEYLVVGsnrkinFELMTKALRaclrgIRYIATNPDRIFPaedgpIPG 184 Archaeoglobus f...
Feature 1                             #                       ###  ##                            
3QGM_A       166 TGXIIGALYWXtgrepdvvVGKPSEVIXREALDIlgldaKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENldqxi 245 Archaeoglobus f...
YP_001636398 166 AAAIIAAIEACtdtrceviVGKPSPIMARTVTNLiglppERCIIVGDRLMTDIAMGVTAGMDTALVLTGDSQRADle--- 242 Chloroflexus au...
P94526       172 VAGMIGAIETSaqaktelvVGKPSWLMAEAACTAmglsaHECMIIGDSIESDIAMGKLYGMKSALVLTGSAKQGEq---- 247 Bacillus subtil...
4JDP_A       185 TGMIIGALYWMtgrepdvvVGKPSEVIMREALDIlgldaKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENldqmi 264 Archaeoglobus f...
Feature 1                          
3QGM_A       246 erhGLKPDYVFNSLKDXV 263 Archaeoglobus fulgidus
YP_001636398 243 -rsPYQPTYVLERIDELI 259 Chloroflexus aurantiacus J-10-fl
P94526       248 --rLYTPDYVLDSIKDVT 263 Bacillus subtilis subsp. subtilis str. 168
4JDP_A       265 erhGLKPDYVFNSLKDMV 282 Archaeoglobus fulgidus DSM 4304

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