2HNH,2HQA


Conserved Protein Domain Family
PHP_PolIIIA_DnaE1

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cd07433: PHP_PolIIIA_DnaE1 
Click on image for an interactive view with Cn3D
Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE1
PolIIIAs that contain an N-terminal PHP domain have been classified into four basic groups based on genome composition, phylogenetic, and domain structural analysis: polC, dnaE1, dnaE2, and dnaE3. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. DNA polymerase III holoenzyme is one of the five eubacterial DNA polymerases that are responsible for the replication of the DNA duplex. PolIIIA core enzyme catalyzes the reaction for polymerizing both DNA strands. dnaE1 is the longest compared to dnaE2 and dnaE3. A unique motif was also identified in dnaE1 and dnaE3 genes.
Statistics
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PSSM-Id: 213988
Aligned: 80 rows
Threshold Bit Score: 341.765
Created: 4-Jun-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative activeputative PHP
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:
  • Comment:The active site of PHP is characterized by a trinuclear metal cluster liganded by histidines, aspartate and glutamate.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #      #                        #                        #               
2HNH_A          5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGaGIKPIVGADFNVQcdll------- 77   Escherichia coli
YP_001248237    4 KFIHLRVQSSYSLLESTLSTQKILSLAQRDEMPAVALTDKSNLFGSLEFALAAAKeGIQPIHGIILNIQyygqn------ 77   Orientia tsut...
YP_004358245    6 YFNHFKVHTQYSICEGALKIVDLAVHCTSNNVASVGISDSFNMCGVLEFSQEISKaGCQPIIGTQINFSfsenn------ 79   Candidatus Pe...
Q92GB2          4 EFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKkGLQPIHGVILNIKydi-------- 75   Rickettsia co...
ZP_01263941     8 NFNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKvGTQPIIGTQIYFRfed-------- 79   Candidatus Pe...
YP_003550847    4 NFVHLRLHTAYSLAESTLRIKNLARLVSEDAQPAAAITDTNNMFGALEFSKAMVNvGVQPIMGAQLNITdsq-------- 75   alpha proteob...
ZP_09200873    21 GFVHLRVHSAYSLSESTLRLNTLAELAAADHQPAVAITDSFNLFGAFEFSQKMMKaGVQPIIGAVVTLRdae-------- 92   SAR 116 clust...
YP_497044      24 AFVPLRIFSSYTMLDGAIDPKAIAKTAAERGFPAAAITDRNGLYGSVAYAKACKDmGVQPVIGTMLAVArperdgaatgf 103  Novosphingobi...
AEH63405        5 PFVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKKdGVQPIIGSLLAVArplrggea--- 81   Zymomonas mob...
ZP_06055073     4 EAINLKIHSQFSICEGAIKIDKLVNYCKEHSVTAVGLCDSENLSGALEFSSQLKKeGIQPLIGTKIYIKenvdg------ 77   alpha proteob...
Feature 1                                                                                         
2HNH_A         78 ---gdelTHLTVLAANNTGYQNLTLLISKAYQRGYGa-aGPIIDRDWLiELNEGLILLSGGRm-GDVGRSLLRGNSALVD 152  Escherichia coli
YP_001248237   78 --dspkySEILLIAQNKAGYQNLLKLASFPYIKNDRt-tINHVTLDDLfTYNEGIIVLSGYFy-GIIGNLLFEKNFVLAE 153  Orientia tsut...
YP_004358245   80 ---lekmGKISLVAKNDTGYKNLLKLSSSSYLSIEKn-eDPHCDIQELiDNSDGLIVLVGASh-SLLSSLVLENNILDSE 154  Candidatus Pe...
Q92GB2         76 ----difAQILLIAKDETGYKNLLKLSSLTFTKNDRk-iCDHIDFEDLiEYQEGLIGLCCYTd-GIVGKCLLARNEEQAM 149  Rickettsia co...
ZP_01263941    80 -----ttGLLPLIALNENGYKRIIELSSRSYLENDAl-sDPHLDVKDLlIDTEGVSLLSGTIq-GLFGKLFEKGRLDEIS 152  Candidatus Pe...
YP_003550847   76 -----gtGEVVLLAQNETGYVNLSHLLSDALLNSEAn-aNPHCNFDALaARSEGLILLSGGVmdGFVGLPASDGRQSLAK 149  alpha proteob...
ZP_09200873    93 -----gtGEVVLLAQTEMGYVHLSDMVSQALLATDPa-qKPEISTDLLaEKQAGLLLLSGGYrhGFLGGPAAQGQQKTAS 166  SAR 116 clust...
YP_497044     104 gpaaptiDWLALYAQDARGYDNLCHLVSRAHLDRPLe-fAPHVVLADLvGHTDGLICLTAASe-GALAQLLAGGQQSAAE 181  Novosphingobi...
AEH63405       82 sgqelkiDWLSLYAQDEDGYNNLCALVSHAHLGRPLe-lPPHVSMEFLeQHSQGLLALTGGKe-GALARLMAEEQQSEAE 159  Zymomonas mob...
ZP_06055073    78 ---kityGTASLYAKNQIGYKNLLKLSSKSYLDLQEhddKPNINLNILkKYHEGIIILIGGSf-SFFSDLLVKNKDEYCF 153  alpha proteob...
Feature 1                                                          # #                            
2HNH_A        153 ECVAFYEEHFpDRYFLELIRTgrpDEESYLHAAVELAEAR-GLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRp 231  Escherichia coli
YP_001248237  154 NYAKKFKTIFgNRFYFEINRIt-sKQIYAIEKSYVQLAQKlNIPLVATNNILFDEGEKYATHEVLMKICNPNIEIDKFKi 232  Orientia tsut...
YP_004358245  155 LLLQKIQKFFeGNLYIEIQRHn-ePHEQALETQLLYFSEKfSIPIIATHEVFYLKKDMYEAHDAYICVGQKTYVNDIKRl 233  Candidatus Pe...
Q92GB2        150 LFARKLQEILgDRFYFEIMRHe-lPEEQFIEDSYIRIAAElAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRk 228  Rickettsia co...
ZP_01263941   153 KLYRSLSSKFnDNFYLEIQRHg-dQNEIAFEKFNLEQSLKiQIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKNRi 231  Candidatus Pe...
YP_003550847  150 SRLQALNTIMqGRVYIELQRHg-lGAEQVAEPILVALADNlDLPLVATNDCRFDSPKMAGPHDALICIGTGRKVSEENRi 228  alpha proteob...
ZP_09200873   167 RRAEWLTSVFgNRAFVELQRHg-hPEEAAAEQMLLDLADEtGLPLVATNDCHFENEQMHVPQRVLQCIANSDRLASMAEt 245  SAR 116 clust...
YP_497044     182 AYVDRLLELFpERLYIEIARRn-dAVEEASETALIDLAYArDLPLVATNPACFAERTFYDAHDAMLCIASSTHVDSADRp 260  Novosphingobi...
AEH63405      160 AYLTLLQKIFpDRLYIELSRRs-eEIEEAAEEGLIDLAYDrDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSPDRr 238  Zymomonas mob...
ZP_06055073   154 NEVKKLKDIFnDNIYIEIQRHn-eSHEKQLEKKLIKLSSDtSIPLIATNEVFYLEQDSYNAHDAFICVGEKNYVNEKNRl 232  alpha proteob...
Feature 1                                                           
2HNH_A        232 rnySPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQF 281  Escherichia coli
YP_001248237  233 ---NNQCYFKSQNEMIETFWDLPQAIENTVYLTQRISFMLEAKKPLLPKF 279  Orientia tsutsugamushi str. Boryong
YP_004358245  234 r-ySEEHYFKSDYEMSELFLDLPEALENNKNLALRCSYRPLTSKPMLPNF 282  Candidatus Pelagibacter sp. IMCC9063
Q92GB2        229 t-vSENCYFKSPHEMIELFSDLPSAIQNTVNLRERCYFAAHANPPMLPNF 277  Rickettsia conorii str. Malish 7
ZP_01263941   232 k-ySNQHYFKSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNI 280  Candidatus Pelagibacter ubique HTCC1002
YP_003550847  229 k-ySPNHYFKSGKQMTDLFVDIPEAIANTVTIAKRCSYMSPERAPILPAF 277  alpha proteobacterium IMCC1322
ZP_09200873   246 g-iTPQHYYKTAEQMTQVFADLPEAVQNTVLIAKRCSFVVGQRQPILPST 294  SAR 116 cluster alpha proteobacterium HIMB100
YP_497044     261 r-sSKEWWIKPAAVMEELFKDLPEALANTLVVAQRCAVMPPKRKPILPSL 309  Novosphingobium aromaticivorans DSM 12444
AEH63405      239 h-sSPEAWMKSGEEMARLFEDIPEAIQNSLVVAQRCAVAAPVRKPILPSL 287  Zymomonas mobilis subsp. mobilis ATCC 10988
ZP_06055073   233 k-ySNQHYFKKTSEFENLFADLPDALENNKNFKYKFNYFPKKSNPLLPSF 281  alpha proteobacterium HIMB114

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