Conserved Protein Domain Family
PydA_Rs_like

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cd07369: PydA_Rs_like 
PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP).
This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Statistics
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PSSM-Id: 153381
View PSSM: cd07369
Aligned: 3 rows
Threshold Bit Score: 604.959
Threshold Setting Gi: 56718875
Created: 21-Apr-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:Fe(II) binding site [ion binding site]
Evidence:
  • Comment:based on similarity to other members of the same protein family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #                                            #                       
AAW28146       6 MAEVVCALSMSHAPGVLGWADAPseavKKSIHEAHQECARRLEAARPDLIIAFLDDHFENHFRNMMPGFAVGISASHSGP 85  Rhizobium sp. T...
XP_002145661   1 MGKIVAAIGLSHAPGAIGFPETAqpdaRARTEEATLKLGETLTRAKPNVIFAFLDDHFENFFRTNMPTIAIGVAETHSGP 80  Penicillium mar...
NP_890665      1 MAKIVAGIGMSHAPGALGWPDAPsasvRRRLLQAADRLGRSLDAARPDVIIAFLDDHFENHFRSLMPTVGIGVADSHPGP 80  Bordetella bron...
Feature 1                                                                                        
AAW28146      86 ADYmmEALKFDEKVVIESNVEHAETLLRGLIKRNFDAARMGEIEYGNTLLVPWKLIRPQy-DIPVIPIYTNVFSPPLPSM 164 Rhizobium sp. T...
XP_002145661  81 ADQlmEALRVPKKHYFPGNPKVAEQLLTALVHDSFDCSRTAEAEFGQNVLMPWVLMKADlpDVSVIPIYLNVFTPPLMKY 160 Penicillium mar...
NP_890665     81 ATQwlEALRLTRQERFGGAPEIAERLLRSLVADGYDVARMGEIEYGNNLMVPWKLMAPRs-APAIIPVFTNVFSPPVMPY 159 Bordetella bron...
Feature 1                                                                                        
AAW28146     165 ARAYDMGAAVRDIVERelptGLRVAFLATGGLSHWPPVWtega---pedDQFLQRMKRYQSEGkhvaeedPTLYSDLAAY 241 Rhizobium sp. T...
XP_002145661 161 SRAYALGQAVRKAITDlp-dDCRVALMCTGGLSHWPPYWnpnqagelptDPFLQKMKEYQTYGhpvlkkyPNLFVELDEY 239 Penicillium mar...
NP_890665    160 RRAYAFGAALRNAAEAld-aDLRVAFMATGGMSHWPPFWndss---peaDAFLARMKAFQTHGksvlekdPHLLRDLAAY 235 Bordetella bron...
Feature 1                                                                #                       
AAW28146     242 EIEMADKMQWPLrHQHPLVNAAWDREIIEAFGRGDTEYLrNCTFESVEEGGGHGGHEILNWMAVMGAMGGSkaDVIGYEP 321 Rhizobium sp. T...
XP_002145661 240 EIEMAKKNEYPLnSKHPLINAEWDKKFLKHYCNGDSEWLkNLTYEEVEEEAGHGGHEVLNYVAVAGAMDGKkaKLLLYEP 319 Penicillium mar...
NP_890665    236 EIEMAERNQWPLnSPHPLVNEAWDRQMLDALARGDVEFLcGLQYEDVKRDGGHGGQEIINWIELMGAMKGApaTLLEYEA 315 Bordetella bron...
Feature 1                      
AAW28146     322 VVEWICGMGYIAYD 335 Rhizobium sp. TAL1145
XP_002145661 320 VLEWICGMAYVDYE 333 Penicillium marneffei ATCC 18224
NP_890665    316 VTEWICGMAYMDYG 329 Bordetella bronchiseptica RB50

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