Conserved Protein Domain Family
HN_L-delphilin-R2_like

?
cd07355: HN_L-delphilin-R2_like 
second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains
This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Statistics
?
PSSM-Id: 259821
Aligned: 8 rows
Threshold Bit Score: 136.396
Created: 8-Apr-2009
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative
Feature 1:putative protein binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of the N-terminal domain of harmonin to an internal peptide of cadherin, and on the human CCM2 HHD dimerization interface

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #   #            #  #  ##  #                                                
NP_001152793  378 IRVQGRTFSQQLDHLLTPPERYGVCRALERFFQHRNIDTLIVDVYPVLDTPAKQVLWQFLYQLLTYEEQELCQEKIACFL 457  house mouse
NP_001038368  210 IRVHGRTFSQQLEHLLTLQERYTICKALETFFQHRNVDTLIVDVFPVLDTPAKQLIWQFIYQLLTYEEQEHCKTKIARFL 289  zebrafish
NP_001072613  199 IRIQGRTFSQQLEHLLTLTERYTVCKALESFFQHRTIDTLIVDIYPVLDTPAKQIIWQFIFQLLTYEEQELCQQKISRFL 278  western clawe...
A4D2P6        389 IRVQGRTFSQQLEHLLTPPERYGVCRALESFFQHRNIDTLIVDVYPVLDTPAKQVLWQFIYQLLTYEEQELCQEKIACFL 468  human
ELU10762      712 DSHSMGSFRQQLDYLLTSRERSQLKRALQIYAERRTIQHLLEDLVEILDTPSKRTLWFYIIPLLSPHHQRFCQRTLGLPE 791  Capitella sp....
EKC40652      398 IDSNGKSFKSHAEYLLTSKERSHMRKAMIHYDTSRNIADFYNKVSQILDTQSKKTLWKFILLKLTPPHQEYCLNKINLSE 477  Pacific oyster
ELU10762      582 MAGQSQSFKQKVDHLLTSKEKTALRRALTEYNNKRNIAQLVDDASQVLDTPSKKSLWTDMLPRMSADHQNYVLQYVQMSK 661  Capitella sp....
EEN63042      476 IVRDGRTFKQQMEHLLTPSEKHQIKASLKRYKDTRNADRLIQEVYPVLDTPAKEKLWGYIIRLLPTEEQHVFSSKVLTVK 555  Florida lancelet

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap