Conserved Protein Domain Family
HN_L-delphilin-R1_like

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cd07354: HN_L-delphilin-R1_like 
first harmonin_N_like domain (repeat 1) of L-delphilin, and related domains
This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin.
Statistics
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PSSM-Id: 259820
Aligned: 10 rows
Threshold Bit Score: 109.298
Created: 3-Apr-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative protein binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of the N-terminal domain of harmonin to an internal peptide of cadherin, and on the human CCM2 HHD dimerization interface

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #   #               #  #  ##  #                                             
NP_001152793  122 RRRKAQEFSCQVDDILGD-RLTAKEQVFTALKQFAAEQRVDELVWTLTLVLP-SEAQGPVLDNLRIFIP------KKHRA 193  house mouse
XP_001640435  177 KYRRARDFYLQMNYYLPG-DNVKKGRLIKALNKYARDRHIEHLCKALVGILQ-THIERKLLREIRFLIP------NKHKP 248  starlet sea a...
XP_002124491  200 GQQKAREFLHKFKLSLKH-DPVEMRNVVEAIQNYSSVKNMDGFVEQICKSLQkVEKRKKLLDEVRYFIP------NRDKH 272  Ciona intesti...
A4D2P6        133 RRRKAQEFSRKVDEILGD-QPTAKEQVFAALKQFAAEQRVDDLVWTLTLALP-REACGPLLDNLRIFIP------KKHRA 204  human
CAG04473      182 RKHKALEFNSKVEQILGD-DPEVKERLFGALKQYAGEKKVEWLASVLPDILT-TEEHRQLISSIRYRLQql--pvCSLRD 257  spotted green...
CAG11443      238 RAHKAMEFNKKVEEVLGE-EPDVKEQLFEVLKQYAAERDVEALAEALPDILI-TEEHQQLIDSVRYPVScs---dSDANA 312  spotted green...
EKC40652      183 RVKRAKSLHDRMNEILGN-DYEKKMAVVSVLKQYAEDRDVDMLARALAAILK-TPKQTRIIQQIRQFIP------PKQRA 254  Pacific oyster
ELU10762      169 RVRKARDFFAKMSIILGS-DYEKKMSVVSLLKQYAESRDVISFAQAINHLLT-KMPHRNLVREIRSPGSstisslPSGRE 246  Capitella sp....
CBY30393       65 GDIRTQTFLKTLQQTLGDeHFETYERLLRALKVYTQDRNLEMLFEKLTTLLS-HPAEEFILHALRGFLP------SADRP 137  Oikopleura di...
EEN63042      211 KHNKAVNFFTKVNVVLEE-DPERKEELMQLLRDYATDKNVETFGTALAFLLT-KPAHRKLLSDIRIFVP------QRHRG 282  Florida lancelet
Feature 1                 
NP_001152793  194 RFDEVVSQ 201  house mouse
XP_001640435  249 QFDVMVGM 256  starlet sea anemone
XP_002124491  273 DFDKLVDK 280  Ciona intestinalis
A4D2P6        205 RFDEVVSQ 212  human
CAG04473      258 PCSLTHSD 265  spotted green pufferfish
CAG11443      313 CQDVPESL 320  spotted green pufferfish
EKC40652      255 RFDEFHKY 262  Pacific oyster
ELU10762      247 SPSSYVIT 254  Capitella sp. I Grassle & Grassle, 1976
CBY30393      138 RFDKLLRD 145  Oikopleura dioica
EEN63042      283 RFDYLVSQ 290  Florida lancelet

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