1F1X,1F1R


Conserved Protein Domain Family
HPCD_N_class_II

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cd07266: HPCD_N_class_II 
Click on image for an interactive view with Cn3D
N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD)
This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a different superfamily.
Statistics
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PSSM-Id: 319927
Aligned: 6 rows
Threshold Bit Score: 182.223
Created: 18-Mar-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
tetramer
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Structure:1FIX_A/B/C/D: tetramer interface of homoprotocatechuate 2,3-dioxygenase from Brevibacterium fuscum, by 4A distance.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1       ##                                       #                         # #        
1F1X_A     14 DILRCAYAELVVTDLAKSRNFYVDvLGLHVSYEDeNQIYLRSFEefIHHNLVLTKGPv---AALKAMAFRVRTpeDVDKA 90  Brevibacterium fuscum
EDZ48007   13 NIVRLSHVEYAVTDLAASRAFYVDtLGLQVTHEDdSRIYLRAMEerGHHCIVLVQADt---ASVGVLGFKLYDepDLDKA 89  Rhodobacterales ba...
BAD08313    1 MILRLGHAELFVTDLERAREFYVHiLGFRENDSDkEHIYLRGVDefDAHTLTLTKNSy---AGLGHFALRVSEheDLERL 77  Bacillus sp. JF8
NP_769607  13 NIIRSSHVVLDVTDLKLSRAFYETtVGLHVEDADdKVVYLRAAEehQHHSLVLRKAAa---PACARLGFKVGNdkDLDKA 89  Bradyrhizobium jap...
NP_285547  20 DIIRIAQAVFTVSDLNASREFYVDlLGMNVLHEEsGALYLRGVEd-REWTLKLEQCRegelPRVRHLGYRVRDeaSLDTL 98  Deinococcus radiod...
1F1R_A     14 DIVRCAYMEIVVTDLAKSREFYVDvLGLHVTEEDeNTIYLRSLEefIHHNLVLRQGPi---AAVAAFAYRVKSpaEVDAA 90  Arthrobacter globi...
Feature 1                                                #
1F1X_A     91 EAYYQELGCRTErrkdgfVKGIGDALRVEDPLGFPYEFFFETTH 134 Brevibacterium fuscum
EDZ48007   90 AEFFASKGLPVEwi---eRPHMGKTLRTRDPWGIPLEFYVKMDR 130 Rhodobacterales bacterium Y4I
BAD08313   78 ADQHKKLGIPCQlvpagvEPGQGMALRVIEPNGHPIEFYHEMQQ 121 Bacillus sp. JF8
NP_769607  90 AAFLSENSLAYAfa---dQPFQGRTLQFTDPFGFQIELYAAMDK 130 Bradyrhizobium japonicum USDA 110
NP_285547  99 LALADAQGLPHRwe---eELDRPRMLRMQDPFGIPLAFYLEVKT 139 Deinococcus radiodurans R1
1F1R_A     91 EAYYKELGCRTErrkegfTKGIGDSVRVEDPLGFPYEFFYETEH 134 Arthrobacter globiformis

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