Conserved Protein Domain Family
BMC_like_1_repeat2

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cd07052: BMC_like_1_repeat2 
Bacterial Micro-Compartment (BMC)-like domain 1 repeat 2
BMC-like domains exist in cyanobacteria, proteobacteria, and actinobacteria and are homologs of the carboxysome shell proteins. They might be encoded from putative organelles involved in unknown metabolic process. Although it has been suggested that these carboxysome shell protein homologs form hexamers and further assemble into the flat facets of the polyhedral bacterial organelles shell at present no experimental evidence exists to directly support this view. Proteins in this CD contain two tandem BMC domains. This CD includes repeat 2 (the second BMC domain of BMC like 1 proteins).
Statistics
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PSSM-Id: 132892
View PSSM: cd07052
Aligned: 12 rows
Threshold Bit Score: 87.7721
Threshold Setting Gi: 119718246
Created: 19-Nov-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putativeputative
Feature 1:putative hexamer interface [polypeptide binding site]
Evidence:
  • Comment:Based on Synechocystis sp. CcmK2 (2A1B) and CcmK4 (2A10)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                #  #        #  ##      #    #   #                       
Q55550       121 QTQLINR-NRRGHMLlaGQTLFVLEVQPAAYASLAANEAEKSAs-INILQVSSIGSFGRLYLGGEERDIKAGARAAIAAI 198 Synechocystis s...
Q7U5I6       173 HAVLINRqNRRGSMIeaGMSMFILETEPAGYVLIAANEAEKASn-ITLVDVKAVGAFGRLTLAGREGDVEEAAAAAMRAI 251 Synechococcus s...
ZP_01046059  121 HATLINRqLRKGSMIlpGKSMFILEVEPAGYIVYAANEAEKAAh-ITLVDVKAFGSFGRLTMMGNEAEAEEAQRAAIAAI 199 Nitrobacter sp....
YP_708766    151 HAVILNR-TRDASMLmpGSALLVYEMAPALFAAVAANSAERVApnLTLVDVQMIGAAGRLFISGDLKSVTIAREEITRVL 229 Rhodococcus sp....
YP_747049    121 HATLINRqLRKGSMLlpGKSMFILEVEPAGYIIYAANEAEKAAh-VTLVDVKPFGSFGRLTMMGSEAEAEAAQHAAVAAI 199 Nitrosomonas eu...
YP_925211    123 QSQLLNR-FTRGMMLvaGQTMLVLECTPAAYINLAANEAEKAAa-VNLMHVASVGVYGRLWMAGTEADILAARNAAVAAL 200 Nocardioides sp...
YP_995462    120 HAYLMNR-NKMGSMVlgGESVYLLECQPAAFAILACNEAEKAAc-IKVVDLRMIGASGRLYLAGTQADVRNARDAAETAL 197 Verminephrobact...
YP_995466    123 HAIILNR-SREASILvpGVALLIYEMAPALFACVAANEAERAVprAVINDVQMMGATGRVFMSGSLAEMRLARETITAKL 201 Verminephrobact...
YP_001023505 122 QAQLINK-WRKGNLLipGQSLYVLEVSPAAYVSLAANEAEKAAd-ISIVEVRALGRFGRLFISGTESDVQAAATAAIACI 199 Methylibium pet...
ACJ12446     120 HAFLVNR-NKSGSMLlpGDSLFVMEMQPASYAILATNEAEKASp-IKVVDYRMMGASGRVYLAGDEDAVRTAADAAGAAL 197 Rhodococcus sp....
ZP_03480029  127 QAQLINRdSRHGSILvpGETLFIMEVEPAAYISIAVNEAEKNAd-IKVVTFDPVGRFGRMYISGTESEVRSARDAAIAAI 205 Clostridium hyl...
YP_002434132 120 HAQLMNV-YRNGSLLipGKDLLTVECEPAAYIFLAANEVEKQVd-VTLVDCVEVGAVGRLSVSGTPSEIKQAEKAAIQAL 197 Desulfatibacill...
Feature 1         
Q55550       199 E 199 Synechocystis sp. PCC 6803
Q7U5I6       252 E 252 Synechococcus sp. WH 8102
ZP_01046059  200 E 200 Nitrobacter sp. Nb-311A
YP_708766    230 E 230 Rhodococcus sp. RHA1
YP_747049    200 E 200 Nitrosomonas eutropha C91
YP_925211    201 E 201 Nocardioides sp. JS614
YP_995462    198 R 198 Verminephrobacter eiseniae EF01-2
YP_995466    202 E 202 Verminephrobacter eiseniae EF01-2
YP_001023505 200 E 200 Methylibium petroleiphilum PM1
ACJ12446     198 E 198 Rhodococcus sp. T104
ZP_03480029  206 T 206 Clostridium hylemonae DSM 15053
YP_002434132 198 K 198 Desulfatibacillum alkenivorans AK-01

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