Conserved Protein Domain Family
BMC_like_1_repeat1

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cd07051: BMC_like_1_repeat1 
Bacterial Micro-Compartment (BMC)-like domain 1 repeat 1
BMC-like domains exist in cyanobacteria, proteobacteria, and actinobacteria and are homologs of the carboxysome shell proteins. They might be encoded from putative organelles involved in unknown metabolic process. Although it has been suggested that these carboxysome shell protein homologs form hexamers and further assemble into the flat facets of the polyhedral bacterial organelles shell at present no experimental evidence exists to directly support this view. Proteins in this CD contain two tandem BMC domains. This CD includes repeat 1 (the first BMC domain of BMC like 1 proteins).
Statistics
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PSSM-Id: 132891
View PSSM: cd07051
Aligned: 14 rows
Threshold Bit Score: 151.68
Threshold Setting Gi: 121552295
Created: 19-Nov-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putativeputative
Feature 1:putative hexamer interface [polypeptide binding site]
Evidence:
  • Comment:Based on Synechocystis sp. CcmK2 (2A1B) and CcmK4 (2A10)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                  #  #        #  ##      #    #   #        
CAO90458          4 ELRSYVYLDNLQLQHAAY--IGTVAQGFLPlPGDASLWIEISPGIEINRITDIALKSAv-VRPGVLFVERlYGLLELHSS 80  Microcystis ...
NP_487297         4 ELRSFVFLDSLQPQHAAY--IGTVAQGFLPlPGDTSLWIEISPGIEINKITDIALKAAs-VRPGVQVVERlYGLLEIHSG 80  Nostoc sp. P...
YP_747049         4 SLRTFVFLDALQPQLASY--LATSSQGFLPvSGDACMWIEVAPGMAVHHLSDIALKKTn-VRMGEQVVERaFGSMELHYR 80  Nitrosomonas...
tigr:MSMEG_0275   3 ELRSFIFIDRLQPQTMSY--LGTWIKGALPrANMAAQIIEVAPGLDIEGVTDVALKHAe-VKAGILVVERqFGYLEFHGE 79  Mycobacteriu...
YP_925211         6 ELRAYCYIDRMQPQYASF--VGTVTQGDLPvEGMAALYVEMAPGNHVFRVVDVAVKATm-ARPGAQIVERqFGMFELHSE 82  Nocardioides...
jgi:Veis_0661     3 DLRACIFIDQLQPQTLAY--MSTWMRGTLPrAKMAAQIVEMAPGLDIEALTDVVLKSAd-VRAGVLVVERqFGTLQFHAY 79  Verminephrob...
YP_995466         3 ELRVYLLIEALQPQFAAClsSPTRARGYPAfAGQSSLIIEVSPALAIHRVTDLALKSApaMEPGILYTERqFGLLELHAD 82  Verminephrob...
YP_001023505      5 QLRTYAFVDRMQPQAAAH--VASTCQGDVPiAGMSELYIEVAPGNEIFRCADIALKAAd-VRPALQVVEReFGLLEIHSR 81  Methylibium ...
ZP_03480029      10 NLRTFIIVDNMQPQYAAV--TGTVSKGDIPlAGMSELYIELAPGSGVYDLLNAALKSSn-AKPAFQIVEReYGEIELHSY 86  Clostridium ...
BAH03473          3 ELRTYVFLDSLQPQLASY--MATASLGFLPvPGDSSLWIEVAPGMAVHRMSDIALKASn-VRLGQQIVERaYGSMVVHHR 79  Hydrogenovib...
Feature 1                                             
CAO90458         81 sQGEVRAAGQAILQYLGvsqrdclKPQIVSSQII 114 Microcystis aeruginosa PCC 7806
NP_487297        81 sQGETRAAGQAILAALGvkreeciKPRIVSSQII 114 Nostoc sp. PCC 7120
YP_747049        81 nQSEVLAAGDAVLQQLGitmesrlRCKIAWNEII 114 Nitrosomonas eutropha C91
tigr:MSMEG_0275  80 -TGAVKAAADAALDYLGgdpdaavRPEILASRII 112 Mycobacterium smegmatis str. MC2 155
YP_925211        83 sQAEVLQAGDAVLGELDlhvserlKPQIASMQVI 116 Nocardioides sp. JS614
jgi:Veis_0661    80 sAAEVHAAADAVLRSLDkrqeelaAPAIQASRIV 113 Verminephrobacter eiseniae EF01-2
YP_995466        83 sLEKLNAAGQAILDGMGakpedqlKPQILYHDII 116 Verminephrobacter eiseniae EF01-2
YP_001023505     82 tQAEVLAAGAAVLEHLRlteadrvKPKVASSMFV 115 Methylibium petroleiphilum PM1
ZP_03480029      87 sPEDVKQAGEAVLDACSltvldrmKPKIVSEQII 120 Clostridium hylemonae DSM 15053
BAH03473         80 dQSDVLEAGQKILNHLNtrefdrqKCVIMWNEII 113 Hydrogenovibrio marinus

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