Conserved Protein Domain Family
cupin_HpaA-like_N

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cd06999: cupin_HpaA-like_N 
AraC/XylS family transcriptional regulators similar to HpaA, N-terminal cupin domain
Members of this family contain an N-terminal cupin domain and a C-terminal AraC/XylS family helix-turn-helix (HTH) DNA-binding domain, similar to Escherichia coli 4-hydroxyphenylacetate catabolism regulatory protein HpaA (also known as 4HPA). HpaA is encoded by the hpaA gene which is located upstream of hpaBC. It is activated by 4-HPA, 3-HPA and phenylacetate, and represents a member of the AraC/XylS family of regulators that recognizes aromatic effectors. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.
Statistics
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PSSM-Id: 380403
Aligned: 127 rows
Threshold Bit Score: 105.66
Created: 5-Jun-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
metal binding
Feature 1: metal binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:H H [HQ] HClick to see conserved feature residue pattern help
Evidence:
  • Comment:The four-coordinate metallocenter usually includes three histidines and one glutamate; however, this protein may bind metal via different amino acids
  • Citation:PMID 8612079

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                             # #    #                                 # 
CAA86047       9 IDISKEYDESLg---tDDVHYQSFARma-pFLASMLPHRHeqyFQMHFLNsGQIELQLDDHRYSVEAPLFVLTPPsVPHA 84  Escherichia coli
NP_252809     10 INIGQVYDQRYa---dAEVHYDALGNlagfFGRNMPAHRHdrfFQVHYVKnGAVRVYLDERQYLESGPMFFLTPPtVPHA 86  Pseudomonas aer...
KID12167      10 INIGQVYDQRYs---dAEVHYDKLGNlaefFGRNMPVHRHdrfFQVHYVKsGAVRVYLDDQQYLESGPMFFLTPPtVAHA 86  Rhodobacteracea...
AEK60325      81 IPQFTLYGENAaaenaEFVHIELIETrsrlHDWHIQSHTHrglFQILFLFgGHVRAEIDAGLWECEGPVAITIHPsVVHG 160 Collimonas fung...
WP_008954114  12 IDIGKVYDSRYe---aSEVNYEAFGKlaefFGRNMPVHRHdrfFQVHYLAsGQIRLYLEDQQYIASAPLFFLTPPtVPHA 88  Pseudogulbenkia...
KHQ96614      15 IPEFSLYGELTqtdsaDFVHIEWIETrsrlYDWHIDTHRHlglFQVLAIFeGTVEANVDDATWEVEGPAVITVHPsAVHN 94  Pandoraea pnome...
PKO39309       5 VPTFSLYGEAQtavsrEFIHIEEISArsaaRNWQIDTHTHeglLQVLFVFsGTARVRLDNLEQDYEPPLAVVIPPgVIHA 84  Betaproteobacte...
WP_093971831  11 APTFGLYGEPPes-hpFFIHIESIKSrsntYNWEIQTHIHqnlNQIIWLAsGTINAQLDGIDFLINSPSAIIVPAlHSHS 89  Pusillimonas sp...
ODS62638      18 LPVFGLYGEGRap-avRMLHVESIDSrsrlYDWEIDAHVHhglHQLIWLQqGRVHALLDEAHSDASGPVALAIPPgVAHA 96  Acidovorax sp. ...
Q1I919        10 INIGQVYDQRYs---dSEVHYDRLGNlagfFGRNMPVHRHdrfFQVHYVKtGSVRVFLDEQRYHESGPMFFLTPPtVPHA 86  Pseudomonas
Feature 1                          
CAA86047      85 FITesDADGHVLTVREDL 102 Escherichia coli
NP_252809     87 FVTeaDADGHVLTVRQQL 104 Pseudomonas aeruginosa PAO1
KID12167      87 FVTeaDADGHVLTVRQQL 104 Rhodobacteraceae bacterium PD-2
AEK60325     161 FDFsrEAQGFVLTVDQNL 178 Collimonas fungivorans Ter331
WP_008954114  89 FITeaDAEGHVLTVRQEL 106 Pseudogulbenkiania ferrooxidans
KHQ96614      95 FRFsrGAHGFVLTMAQSV 112 Pandoraea pnomenusa
PKO39309      85 FKFmpQTEGCVLTLDSAG 102 Betaproteobacteria bacterium HGW-Betaproteobacteria-6
WP_093971831  90 FQTnnEATGSVLTVSHDI 107 Pusillimonas sp. T2
ODS62638      97 FRFapHTVGHVLTFDAAL 114 Acidovorax sp. SCN 68-22
Q1I919        87 FVTeaDADGHVLTVRQQL 104 Pseudomonas

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