2F2H,2XVG,4KMQ,2G3M,2X2H,4B9Y,2QLY


Conserved Protein Domain Family
GH31

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cd06589: GH31 
Click on image for an interactive view with Cn3D
glycosyl hydrolase family 31 (GH31)
GH31 enzymes occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes. The lysosomal acid alpha-glucosidase (GAA) is essential for glycogen degradation and a deficiency or malfunction of this enzyme causes glycogen storage disease II, also known as Pompe disease. In the endoplasmic reticulum, alpha-glucosidase II catalyzes the second step in the N-linked oligosaccharide processing pathway that constitutes part of the quality control system for glycoprotein folding and maturation. The intestinal enzymes sucrase-isomaltase (SI) and maltase-glucoamylase (MGAM) play key roles in the final stage of carbohydrate digestion, making alpha-glucosidase inhibitors useful in the treatment of type 2 diabetes. GH31 alpha-glycosidases are retaining enzymes that cleave their substrates via an acid/base-catalyzed, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate. Two aspartic acid residues have been identified as the catalytic nucleophile and the acid/base, respectively.
Statistics
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PSSM-Id: 269876
Aligned: 16 rows
Threshold Bit Score: 204.508
Created: 8-Jan-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitecatalytic site
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:2QLY_A; N-terminal catalytic domain of Homo sapiens MGAM (maltase-glucoamylase) binds two glycerol molecules; defined at 4A contacts.
  • Structure:2F2H_A; Escherichia coli YicI xylosidase binds XTG (4-nitrophenyl-(6-S-alpha-D-xylopyranosyl)-beta-D-glucopyranoside); defined at 4A contacts.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                             ##          
2F2H_A        259 GRPALPPAW--SFGLWLTtsftt-------------------nydeaTVNSFIDGMAErnlPLHVFHFDCFwmka----f 313  Escherichia coli
2XVG_A        425 GKSVMLPKW--AYGFWQSrery---------------------kssdEIIQNLKEYRDrkiPIDNIVLDWSywpe----d 477  Cellvibrio ja...
4KMQ_A        376 GKTTLLPKW--AFGLWXSanew---------------------dresDVSSALSNAKAndiPATGFVLEQWsde------ 426  Listeria mono...
2G3M_A        167 GKPFLPPMW--AFGYMISrysy---------------------ypqdKVVELVDIMQKegfRVAGVFLDIHymd------ 217  Sulfolobus so...
2X2H_A        345 KRSVMPPKY--VFGFFQGvfgtssllra----------hmpagenniSVEEIVEGYQNnnfPFEGLAVDVDmqd------ 406  Gracilariopsi...
4B9Y_A        254 GRQPLPPRW--ALGSFASrfgy---------------------rseaETRATVQKYKTedfPLDTIVLDLYwfgkdi-kg 309  Cellvibrio ja...
2QLY_A        282 GRPALPSYW--ALGFHLSryey---------------------gtldNMREVVERNRAaqlPYDVQHADIDymd------ 332  human
NP_561962     288 GEPVLLPEYgfYLGHANCysrdwindetgqesqtqkpgfdrqeslmvDAKKVVDDHVSndtPLGWFLPNDGy-------- 359  Clostridium p...
WP_019597400  249 GRSPLLPRF--AHGLHVGtysggtwg-------------hedltstqYVVELVRKFREmgiPLDVLHLDSTwrmfgkngg 313  Rhodonellum p...
WP_004341519  252 GAAPLMPRE--AYGLHVGsysggtwk-------------heketsdtYVIKLISRLRRegiPFDLLWLDSTwrnfms-lg 315  Prevotella bu...
Feature 1                                                                                         
2F2H_A        314 qwcDFEWDp--------------------lTFPdp-----------eGMIRRLka----kGLKICVWINPYIgqkspvfk 358  Escherichia coli
2XVG_A        478 awgSHDFDk--------------------qFFPdp-----------kALVDKVha----mNAQIMISVWPKFypttdnyk 522  Cellvibrio ja...
4KMQ_A        427 -etYYIWNnatytakkngeafsyddftfngKWTdp-----------kGXVDSVhd----aGXNIVLWQVPVLkddgtvye 490  Listeria mono...
2G3M_A        218 sykLFTWHp--------------------yRFPep-----------kKLIDELhk----rNVKLITIVDHGIrvdqnysp 262  Sulfolobus so...
2X2H_A        407 nlrVFTTKg---------------------EFWtanrvgtggdpnnrSVFEWAhd----kGLVCQTNITCFLrndnegqd 461  Gracilariopsi...
4B9Y_A        310 hmgNLDWDk--------------------eNFPtp-----------lDMMADFkq----qGVKTVLITEPFVltsskrwd 354  Cellvibrio ja...
2QLY_A        333 errDFTYDs--------------------vDFKgf-----------pEFVNELhn----nGQKLVIIVDPAIsnnssssk 377  human
NP_561962     360 ---GCGYG----------------------REEsid--------gniANLKEFvdyargfGIQTGLWTQSSLkptgnq-- 404  Clostridium p...
WP_019597400  314 sgaTTFEWr--------------------eTFLdp-----------kSMFDSLya---ldINMVGLHVRPRFdngnqlnl 359  Rhodonellum p...
WP_004341519  316 nggCSFEFr--------------------eTFKnp-----------kNMIEYAtk---nhVAMLGLHVRSLLdngkrntl 361  Prevotella bu...
Feature 1                                                                                        #
2F2H_A        359 elqekgyllkrpdg-----------------------slwqwdkwqpglaiydftnpdaCKWYADKLkgl-vamGVDCFK 414  Escherichia coli
2XVG_A        523 elnakgfmfnrnlde----------------------knldwigkgylnafydpfspeaTAIFWKQIrdkinvhGFDAWW 580  Cellvibrio ja...
4KMQ_A        491 qrdndeeyxisqgysaddg--------------tgapyrvpasqwfgngilldftnkdaVDWWTSQReylltevGIDGFK 556  Listeria mono...
2G3M_A        263 flsgmgkfceiesg-----------------------elfvgkmwpgttvypdffredtREWWAGLIsew-lsqGVDGIW 318  Sulfolobus so...
2X2H_A        462 yevnqtlrerqlytkndsltgtdfgmtddgpsdayighldygggvecdalfpdwgrpdvAEWWGNNYkkl-fsiGLDFVW 540  Gracilariopsi...
4B9Y_A        355 davkakalakdpqg-----------------------qpkafelyfgnggiidvfskegSRWFSSIYkdl-skqGVAGWW 410  Cellvibrio ja...
2QLY_A        378 pygpydrgsdmkiwvnss----------------dgvtpligevwpgqtvfpdytnpncAVWWTKEFelfhnqvEFDGIW 441  human
NP_561962     405 ------------------------------------------------------eayleRDIDKEVGv-----aGTNGVK 425  Clostridium p...
WP_019597400  360 ldqariaghv-------------------------------ypeennqgefvnffdnkaVDWWWENGvkkiadvGAMFLK 408  Rhodonellum p...
WP_004341519  362 lddarksgyt--------------------------------itdgntnaivdffspeaVDWWWKNAakrvtdlGVKFLK 409  Prevotella bu...
Feature 1          ##                                                                             
2F2H_A        415 TDFGEriptdvqwf-----------------------------------------dgsdpqkmHNHYAYIYNELVWNvlk 453  Escherichia coli
2XVG_A        581 LDAVEpdihsnltfekrkw-------------------------------lmtpnargngaeiFNAYAVPHAEGVYQgel 629  Cellvibrio ja...
4KMQ_A        557 TDGGExvwgrdttf----------------------------------------sngekgqexRNRYPTDYVSSYFDfak 596  Listeria mono...
2G3M_A        319 LDMNEptdfsraieirdvlsslpvqfrdd----------rlvttfpdnvvhylrgkrvkhekvRNAYPLYEAMATFKgfr 388  Sulfolobus so...
2X2H_A        541 QDMTVpammphkigddinvkpdgnwpnaddpsngqynwktyhpqvlvtdmryenhgrepmvtqRNIHAYTLCESTRKegi 620  Gracilariopsi...
4B9Y_A        411 GDLGEpemhpedtq----------------------------------------haigdadtvHNAYGHRWAEMLYQqql 450  Cellvibrio ja...
2QLY_A        442 IDMNEvsnfvdgsvsgcstnnlnnppftpr--------ildgylfcktlcmdavqhwgkqydiHNLYGYSMAVATAEaak 513  human
NP_561962     426 TDVAWvg-------------------------------------------------------aGYSFALNSVRQAAEgii 450  Clostridium p...
WP_019597400  409 TDEGSafgrqanestk------------------------------------tgptgasaqklHNIFPVAYAKAPFEkfk 452  Rhodonellum p...
WP_004341519  410 TDVGSalhfkna--------------------------------------------slrqqqmHNLFPIAYAKAPYElfa 445  Prevotella bu...
Feature 1                          #             #  #                                             
2F2H_A        454 dt-----vgeeeAVLFARSASVGAQKf-pVHWGGDCYa-NYESMAESLRGGLSIGlsgfgFWSHDIggfe---------- 516  Escherichia coli
2XVG_A        630 at-----dgdkrSFILTRSGFGGIQRtgsAIWSGDIVs-RWSDMKDQIAAGIGTNlagvtNWTFDIggftpedrfrhgkk 703  Cellvibrio ja...
4KMQ_A        597 s-------inpeAVSFSRSGTSGAQKs-gIYWSGDQTs-TFDSFQASLKAGLSAStsgvsYWAWDXagft---------- 657  Listeria mono...
2G3M_A        389 ts------hrneIFILSRAGYAGIQRy-aFIWTGDNTp-SWDDLKLQLQLVLGLSisgvpFVGCDIggfqgrn------- 453  Sulfolobus so...
2X2H_A        621 venadtltkfrrSYIISRGGYIGNQHf-gGMWVGDNSt-TSNYIQMMIANNINMNmsclpLVGSDIggftsydn------ 692  Gracilariopsi...
4B9Y_A        451 dq-----fpelrPFIMMRAGFVGSQRygmIPWTGDVSr-TWGGLASQVELALQMSllgfgYIHSDLggfad--------- 515  Cellvibrio ja...
2QLY_A        514 tv-----fpnkrSFILTRSTFAGSGKf-aAHWLGDNTa-TWDDLRWSIPGVLEFNlfgipMVGPDIcgfa---------- 576  human
NP_561962     451 nns----kdkarPFIVSLDGWAGTQRy-aSIWSGDQYggEWEYIRFHIPTYIGAGlsgqpNVGSDMdgi----------- 514  Clostridium p...
WP_019597400  453 kh------nqmrGMNHTREGYAGIQRy-pFIWAGDWPs-EWQYFAPVIKAGINMGlsgvgYWSHNMggfe---------- 514  Rhodonellum p...
WP_004341519  446 ql------ngqrGFNHTREGYAGIQRy-pFIWAGDWGs-EWQWFEPVIRGGLNIGlsgvgYWSHCMggfeq--------- 508  Prevotella bu...
Feature 1                                           # #                                  
2F2H_A        517 -------------ntaPAHVYKRWCAFGLlsSHSRLHgsksyrv-----------pwayddESCDVVRFFT 563  Escherichia coli
2XVG_A        704 gfvgswtaldaeqvdeWQELNTRWYQFGAfvPLYRSHgqnpyrei--------fniadegtEVYNAMVWYT 766  Cellvibrio japonicus
4KMQ_A        658 ------------gdypTAELYKRATAXAAfaPIXQFHseksdpspseerspwnavartgdeTILPTFQKYL 716  Listeria monocytogenes...
2G3M_A        454 ----------faeidnSMDLLVKYYALALffPFYRSHkatdgidt---------epvflpdYYKEKVKEIV 505  Sulfolobus solfataricus
2X2H_A        693 ---------enqrtpcTGDLMVRYVQAGCllPWFRNHydrwieskdhg---kdyqelymypNEMDTLRKFV 751  Gracilariopsis lemanei...
4B9Y_A        516 ------------getlDKEMYIRWLQYGVfqPVYRPHgqdhips----------epvfqdeETKAILRPLV 564  Cellvibrio japonicus
2QLY_A        577 -------------ldtPEELCRRWMQLGAfyPFSRNHngqgykdqd-------pasfgadsLLLNSSRHYL 627  human
NP_561962     515 -------------fggSKLVQTRDFQWKAf-TPVQIDmdgwgana--------kypyvfgePYTSINRMYL 563  Clostridium perfringen...
WP_019597400  515 -------------hdaDPELYSRWVQFGMfsPIAHLFgmdhpgyk---------epwnygeKALEIFSQYD 563  Rhodonellum psychrophilum
WP_004341519  509 ------------ysayDTDLYLRWCQFGMfsPVSILFgmdhpryh---------apwtygeEAQRIFIKYD 558  Prevotella buccae

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