1XNE,2Z0T


Conserved Protein Domain Family
ASCH_PF0470_like

?
cd06555: ASCH_PF0470_like 
Click on image for an interactive view with Cn3D
ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Statistics
?
PSSM-Id: 119347
View PSSM: cd06555
Aligned: 22 rows
Threshold Bit Score: 108.097
Threshold Setting Gi: 90412901
Created: 12-Aug-2008
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1XNE_A         4 YRLYLKdEYLEMVKSGKKRIEVRVAYPQlkDIKRGDKIIFNd------lIPAEVVEVKKYEtFRQVLREEPIDKifpd-k 76  Pyrococcus furi...
ZP_02637107    4 HVMNLSpDSFEMIEIGTKTIEMRLYDEKrkKISKGDYINFIstmnnkkqLEVKVIDIYKYNnFEELYKEFNKVKlgy--r 81  Clostridium per...
YP_002124132   3 HEMMLTpRPFAMIEAGVKTIELRLNDEKrqAIKVGDWICFYctedhsqiLQAEVVGLHYFDdFRQLYQQLPLEKcgyrqe 82  Streptococcus e...
NP_241682      3 HAMGLFkVPFESIKAGRKTVEVRLNDAKrrQVAVGDTIEFTklpekeetLKVVVTKLRSYDtFEAMYKEIPFEAfdce-g 81  Bacillus halodu...
ZP_02207936  159 FEMKLNkEPFRKIQSGKKTIELRLFDEKrsQIREGDAIHFFmvgepdqkLLVEVLKIHRFPsFKELYENLPLSKcgyesd 238 Coprococcus eut...
YP_001988657   1 MRMGLAhDQFLLVKQGSRTIEIRLNDEKrqQLKVGDTIVFEdttt-aqtQRRTVSALEKFTsFAELYHKYRGPQvgsapt 79  Lactobacillus c...
NP_786337      2 TTMQLIhPQWLLIKSGLKTIEIRLNDAKrqALQVGDIVNFIdltt-gqqLTTQLIDITRFAsFESLLSEYTAVQvgsapg 80  Lactobacillus p...
YP_810885      1 MIMGLNhSQFLLMQQGDKSVEIRLNDRKrsFLKEGSLITFIdlkt-dkkIEVIVKKIYKFKtFCELYKSFTSTEvgsatn 79  Oenococcus oeni...
YP_001921526   3 FNMNLQeKYFNYIVNGSKDIEIRLLDEKrsKLSVGDIIIFNshd---ksIKVKVINIKLFNsFSDLLSNINGKRigfs-t 78  Clostridium bot...
YP_818607      1 MLMGLNhDQFVLVQRGTKTIEIGLYDEKraQLKIGHKILFTdlen-nnqIMVSVKQLYKFTtFADLYAQFNGAKvgsnst 79  Leuconostoc mes...
1XNE_A        77 psFEKALKRFHNMYPkwkeyrYGVLAIKFRV 107 Pyrococcus furiosus
ZP_02637107   82 edEIAHYTDMEQYYSkediakYGVIGIELEV 112 Clostridium perfringens B str. ATCC 3626
YP_002124132  83 elSQAKPEDMELYYSkdrqakYGVVGIELKR 113 Streptococcus equi subsp. zooepidemicus MGCS10565
NP_241682     82 wtMDEMLDGTYEIYTseqeneWGALPIYVER 112 Bacillus halodurans C-125
ZP_02207936  239 drAAADYRDMLAYYSeeeekkYGVVGIEFRL 269 Coprococcus eutactus ATCC 27759
YP_001988657  80 dsETKMVADTYQLYTawqeasFGVLAIHLQP 110 Lactobacillus casei BL23
NP_786337     81 tpVTQMVQEMLTLYSpvqvaqSGVVALQVRP 111 Lactobacillus plantarum WCFS1
YP_810885     80 dsLEKMVNDTYKIYSpaqernFGVLAIRIRL 110 Oenococcus oeni PSU-1
YP_001921526  79 ssQNVILNELYSIYSeskvckYKVMCIEFKK 109 Clostridium botulinum E3 str. Alaska E43
YP_818607     80 dnIEKIVNDTYEIYTpeqerhYGVLAIEMLL 110 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap