1T62


Conserved Protein Domain Family
ASCH_Ef3133_like

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cd06553: ASCH_Ef3133_like 
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ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Statistics
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PSSM-Id: 119345
View PSSM: cd06553
Aligned: 63 rows
Threshold Bit Score: 139.235
Threshold Setting Gi: 163760730
Created: 12-Aug-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1T62_B        23 PDVWMFGdgsseMGNRLGQLVVSGRKTATCSSld-iYKMEEeqlPKAGQYDIILDgqsQPLAIIRTTKVEIMPmnKVSES 101 Enterococcus fa...
YP_001521072  27 YLVEQFGds-peMANELGQLVLAGTKTATCSAlw-eWEAEHsplPTVGLKTIVVDgseTPFCIIETTEVNICPfdQIDAQ 104 Acaryochloris m...
ZP_00953430   27 RGVDAFGds-peMMDELLALVLSRTKQATASLar-wYVDDPeglPKPGDLWLITDgrgVPACVTRTTRVDVMPirEVDAQ 104 Oceanicaulis al...
YP_001202357  13 LRSFAFGdg-peLADKLLDLVIKGVKTATCSTe---DEPNT---SKPGERWIVLDgqgRPRCVIESTEISYRRfdEVDAA 85  Bradyrhizobium ...
YP_757762     23 EDVFAFGds-pgLADELLALVLADRKKATASHsr-wHELGEeplPRPGDLALVLDgrgKPACIIRTSRVDRHPikDTTEE 100 Maricaulis mari...
YP_001223604  37 HTVEHFGdh-arLADELLGIVLSGRKRATAELva-dFLARGdevPRIGSHWIACDstgAPRIVIRSTELRVGPftSADAA 114 Clavibacter mic...
YP_759164     10 LKQFRFGds-peLADRLASLVVAGVKKATCSAv---ANGFE---AALGEQQVVLSgegRPVAVIETLSLDVLPfeKVTPA 82  Hyphomonas nept...
ZP_01750322   15 AGTFKFGds-aeLCQRLIALVRQGRKTATCAAls-dFEGEPeamPVVGRCDIAANwdgTPALVIRTTKMQEIRycDVTED 92  Roseobacter sp....
Q28T99        25 AETSIFGds-atLSAELLALVRKGVKRATCTAmadvASGEDa-mPQIGRIDIFTTfdgRPALATRTLELRLVRfcDMTEE 102 Jannaschia sp. ...
ZP_01549383   13 AETFKFGdn-adLCAQLIALVRAGKKTATCGAlq-sYEDGGevlPVHGRRDIALNwddTPALVIETLEVSVVRfcDVGED 90  Labrenzia aggre...
1T62_B       102 FAQAEGEGdltlDYWYEEHARFFKEELApyqlqfypdMLLVCQSFEVVD 150 Enterococcus faecalis V583
YP_001521072 105 FAYDEGEDdrtlESWQREHWKYFSRALPkidkepthnMLLVCERFQIVY 153 Acaryochloris marina MBIC11017
ZP_00953430  105 FAWDEGEGdrsyDYWITEHRKFWRREAAregfeysddLDVVCERFELVW 153 Oceanicaulis alexandrii HTCC2633
YP_001202357  86 FAFDEGEGdrslNYWREAHRTYFTRLGKfs-----dtMMLMCERFRLVE 129 Bradyrhizobium sp. ORS278
YP_757762    101 FAWAEGEGdrslSWWMDAHITYWTREAAregyafntgQDAIFHRFDRIW 149 Maricaulis maris MCS10
YP_001223604 115 FAHDEGEDdlslESWRTQHRIYWERVSAargaawsedDEIVFERFAVVW 163 Clavibacter michiganensis subsp. michiganensis...
YP_759164     83 QAAQEGEGdlsyPYWRDAHEAYFQREGTya-----pdMDVIFETFRLVA 126 Hyphomonas neptunium ATCC 15444
ZP_01750322   93 MALAEGENdt-lLGWRKDHKAYFKRNGGfh-----peMMLVFEHFELVE 135 Roseobacter sp. CCS2
Q28T99       103 MALAEGEDet-lAGWQEGHGRYYRRLGIfa-----pdMELIWERFEVVE 145 Jannaschia sp. CCS1
ZP_01549383   91 FALAEGENed-lAGWRQDHQTFFERNGGfd-----peMDLVCERFRVVE 133 Labrenzia aggregata IAM 12614
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