3SAJ


Conserved Protein Domain Family
PBP1_iGluR_AMPA_GluR1

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cd06390: PBP1_iGluR_AMPA_GluR1 
Click on image for an interactive view with Cn3D
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Statistics
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PSSM-Id: 380613
Aligned: 5 rows
Threshold Bit Score: 752.157
Created: 11-Feb-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interfaceputative
Conserved site includes 44 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:3SAJ; dimer interface of Rattus norvegicus GluR1, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                ###  ###                     ##  ##  ###
3SAJ_A        12 QIGGLFPnQQSQEHAAFRFALSQLTEPPKLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYErrtvNMLTSFCGALH 91  Norway rat
NP_991293     26 NIGGLFP-TDSHEYDVFRFALSQHNDVPKLVPQVDMVDTGSSFAMTYAFCSQFSKGVYAIIGLYDrktmNMLMSFCGALH 104 zebrafish
Q38PU8        26 QIGGLFPnQQSQEHAAFRFALSQLTEPPKLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYErrtvNMLTSFCGALH 105 crab-eating mac...
NP_001001774  26 QIGGLFPnQQSQEHAAFRFALSQLTEPPKLLPQIDIVNISDSFEMTYTFCSQFSKGVYAIFGFYErrtvNMLTSFCGALH 105 chicken
OCT86290      26 QIGGLFPnQQSQEHAAFRFALSQLSEPPKLLPQIDIVNISDSFEMTYTFCSQFSKGVYSIFGFYDrktvNMLTSFCGALH 105 African clawed ...
Feature 1                      #                            # #   #   #  ##       # ## #  #      
3SAJ_A        92 VCFITPSFpvdTSNQFVLQLRPELQEALISIIDhykWQTFVYIYDADrGLSVLQRVLDTAAEKNWQVTAVNILTTTEegY 171 Norway rat
NP_991293    105 VCFVTPSFpidTNNQFVIQLRPELQDALIALVEhykWNKFVYMYSSDsGLTVLQKILDTAAEKTWQVTSINFDTLTEaaF 184 zebrafish
Q38PU8       106 VCFITPSFpvdTSNQFVLQLRPELQDALISIIDhykWQKFVYIYDADrGLSVLQKVLDTAAEKNWQVTAVNILTTTEegY 185 crab-eating mac...
NP_001001774 106 VCFITPSFpveTSNQFVLQLRPELQDALISVIEhysWQKFVYIYDADrGLSVLQKVLDTAAEKNWQVTAVNILTTTEegY 185 chicken
OCT86290     106 VCFITPSFpvvTSNQFVLQLRPELQDALISVIEyykWKKFVYIYDADrGLSVLQKVLDTAAEKNWQVTAVNILTTTEegY 185 African clawed ...
Feature 1         #  ##                                                                          
3SAJ_A       172 RMLFQDLEKKKerLVVVDCEserLNAILGQIVKLekngiGYHYILANLGFmdidlNKFKESGANVTGFQLVNYTdtiPAR 251 Norway rat
NP_991293    185 LKAIQDLDNKKefKIILDCElerLNSILNLIAAQkknlkNYHYILANLGFldlnlTEFRKGGANVTGFQLMNYTnptVSR 264 zebrafish
Q38PU8       186 RMLFQDLEKKKerLVVVDCEserLNAILGQIIKLekngiGYHYILANLGFmdidlNKFKESGANVTGFQLVNYTdtiPAK 265 crab-eating mac...
NP_001001774 186 RVLFQELQKKKerLVVVDCEserLNIILSKIIKLekngnGYHYILANMGFmdidlTKFRESGANVTGFQLVNYTdtvPAR 265 chicken
OCT86290     186 RLLFQDLDKSKdrQIVIDCEserLNAILTQVVKLekniiGYHYILANLGFmdidmQKFKEAGANVTGFQLVNYTepmVSR 265 African clawed ...
Feature 1                                                           # ############ #  #   #      
3SAJ_A       252 IMQQWrtsdsrdhtrvdwkrpKYTSALTYDGVKVMAEAFQSlrRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVR 331 Norway rat
NP_991293    265 TIQDWlefdskdl-kspkrrlKYTGALTYDGVTVMATAFQNlrKQRIDISRRGNAGECLANPPAPWGQGIDIQRALQQVQ 343 zebrafish
Q38PU8       266 IMQQWknsdardhtrvdwkrpKYTSALTYDGVKVMAEAFQSlrRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVR 345 crab-eating mac...
NP_001001774 266 IMQQWrnndarelprvdwkrpKYTSALTYDGVRVMAEAFQNlrRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVR 345 chicken
OCT86290     266 IMQQWknydgreqprldwkkpKYTSALTYDGVKVMAEAFQSlrKQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVR 345 African clawed ...
Feature 1                                                       
3SAJ_A       332 FEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAA 378 Norway rat
NP_991293    344 FEGLTGHVQFNDKGHRTNFTVSVMEFGPSGPKKVGYWNQREKYVSTA 390 zebrafish
Q38PU8       346 FEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAA 392 crab-eating macaque
NP_001001774 346 FEGLSGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDEKLVPVA 392 chicken
OCT86290     346 LEGLSGNVQFNEKGRRTNYTLHVLELKHEGIRQVAHWNEDDKLIPLA 392 African clawed frog

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