3H6G


Conserved Protein Domain Family
PBP1_iGluR_Kainate

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cd06382: PBP1_iGluR_Kainate 
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N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type 1 superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type 2. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1 and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated by kainate and glutamate when expressed in heterologous systems. Kainate receptors are involved in excitatory neurotransmission by activating postsynaptic receptors and in inhibitory neurotransmission by modulating release of the inhibitory neurotransmitter GABA through a presynaptic mechanism. Kainate receptors are closely related to AMAP receptors. In contrast of AMPA receptors, kainate receptors play only a minor role in signaling at synapses and their function is not well defined.
Statistics
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PSSM-Id: 380605
Aligned: 52 rows
Threshold Bit Score: 303.376
Created: 17-May-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Structure:3H6G; dimer interface of the N-terminal domain of GluR6-subtype glutamate receptor, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                             ###   #                     
3H6G_A          6 RFGGIFEyvesgPMGAEELAFRFAVNTINRnrtllpnTTLTYDTQKin--lyDSFEASKKACDQLS--LGVAAIFGPSHs 81   Norway rat
KRT79265       23 NLGIVHYe----KADPWNVDILNRVDRYYKrn----rDPDLPNIDFlhtnvsDILSGNNTLCELTG--IGIMGLIGPTFq 92   Oryctes borbo...
ANQ46493       29 TIGVLLQe----LASQINIPLNSTIYKKNMfd---qrAYFSTKILKvs--psDNFEASQTLCTLLDsdLGVVAVYSDSSr 99   Phyllotreta s...
KRT86253       27 TIGAVFHe----DSNEIETAFKCAVKRFNTfn---naIFFKTVIRHvp--keNPFAVYEAVCKMLDenKGFAALFGPPSt 97   Oryctes borbo...
KRT86243       23 DLGILYSd----EDPLAEIAIRHIEVRFKLmt----nFSVIPHLINik--nkDSFTVERIVCDMIQ--KGVYAIIGPTTe 90   Oryctes borbo...
ENN70425       19 HFVAIFLdd-deYVEETTFAVKNTLKILRAks----tYQVTEHIIKls--keSSFEAGQFVCDLIR--NGVSAIFGPESp 89   mountain pine...
OWR43841       42 YIGVILP-----NNSVTEVAFASALARASMes---eqYRYSMKIVYvp--ygDSFAASKAACELLS--AGVIAIFGPTDt 109  Danaus plexip...
NP_001036373   26 MVGSIFTs----DKDESEIAFRTAVDRANIle---rnVELVPIVVYan--tdDSFIMEKMVCNLIS--QGVIAIFGPSTg 94   fruit fly
CRL04875      923 TVGGIFHg----DDDISQIAFKHAIERINSrs---tlYQIVPMMFNis--rtDSFKAQTIVCQLAS--EGVDVIFGPSSv 991  Clunio marinus
APC94352       24 NVAVFLDdd--eHYEDTVIAIASVVRRINLyss--vqYLLYPHIFKvq--knEILKTGQTACSLLE--KGIAAIFGPESi 95   Pyrrhalta aen...
Feature 1                    #                                                             #  #   
3H6G_A         82 ssanavqsiCNALGVPHIQTRWkhqvsd----------nkdsfYVSLYPDFSSLSRAILDLVQffkWKTVTVVYDDStGL 151  Norway rat
KRT79265       93 pvapilqsiCANLEIPYIEYTWksksp------------pqkmSINFFPESELLAKGFAALVNsmnWKSFTVLYETAdGL 160  Oryctes borbo...
ANQ46493      100 ttpi-lestCTFFEVPFITTSWkapspakrnppakrnpeevraMINFFPEAELFAKGLAEIVRslqWPSFIIIYENEeGL 178  Phyllotreta s...
KRT86253       98 svadvvdsiASKIELPNMQMQSpsslwpe--------dssnlyTINVHPNLRNLQKGIAKTVEslqWKTYAILYQDRdSI 169  Oryctes borbo...
KRT86243       91 eanlivqsvSEMFELPQLQTFWnpdldd---------snnstqVFNLYPEPTMLGKAWATLVKemhWKSYAVLYEDEeGL 161  Oryctes borbo...
ENN70425       90 enneiiqsvAASLQIPYFQNSWnpqee------------aatsVFNLRPNSDALSRALAALVRendWKTYTVMYENEdSL 157  mountain pine...
OWR43841      110 tsaaavearCRSAGVPHIQALWrpphvrg-------lerlsppSINLHPESVALSKAVAIFIKdsdWNTYTLLYDDDqGL 182  Danaus plexip...
NP_001036373   95 sssdiiasiCDTLDIPHIVYDWipnesip-------drehstmTLNVHPDNLLLSQGLAEIVQsfaWRSFTVVYETDkEL 167  fruit fly
CRL04875      992 etsgivasiAEKFEIPHIIFHWktkplywe------ksvehtmTLNLYPDSNALAEAYGNVLSgysWKSYTIVYENKeSL 1065 Clunio marinus
APC94352       96 eindfiqslSSSLQIPQFQTFWnpklaslp------isdqpiqIFNLHPSPKALSKALATLVRendWKSYTILYEDDnGL 169  Pyrrhalta aen...
Feature 1         #  #  ##             ####                                                       
3H6G_A        152 IRLQELIKAPsr----ynLRLKIRQLPADtkDAKPLLKEMKRGkefHVIFDCshemAAGILKQALAMgmmteYYHYIFTT 227  Norway rat
KRT79265      161 TRLREILKGSvp----kdLPVIFKQINPGd-DYRIVFKQITNYtenTIIIDCelerITTILLQAREVgmleyHHKYFLAN 235  Oryctes borbo...
ANQ46493      179 IRMQEILKLQeinpdskkNNIVVMHLGPGp-DYRPLLKKIHNTtedNIILDCevdkILPILTQANSVgmlglHNRYFITS 257  Phyllotreta s...
KRT86253      170 IRLQEVMKLSsi----gkESVLLKKLEPP--DYRLVLKEVKRLgyaHIIIDYdstyLMEILQQAKELgmleyLYNYFLTS 243  Oryctes borbo...
KRT86243      162 IRAQEVLKLErrd--andFPITIRKLLPEe-DQSTLLKDIKAGmetHIILVCrsnlFVDILKQAQTInmledFRSYILMS 238  Oryctes borbo...
ENN70425      158 LRLRETLKQRkp----ndLSIAFICLGSGp-DYRTVLKQIKKTldtKFILDCkadrILDIFRQAKEVgllkdYHSYILTD 232  mountain pine...
OWR43841      183 IRLQEILKNAqp-----gHKWLARRLRPGe-DNRPLLKLLKAYgetRVIIDCpanrVLEYLRQAHEVkffedYMSYILMS 256  Danaus plexip...
NP_001036373  168 QQLQDILQVGep----isNPTTVKQLGPGd-DHRPFLKEIKLStdnCLILHCapdnLLKILQQANELkmlgeYQSVFIPL 242  fruit fly
CRL04875     1066 IRLKDVLQVHd------sSSLKIEIRKLDd-RYGSILKEIRARgdvNIVLDIgpdkIVPFLTEAASVkmlgdYNNYFITN 1138 Clunio marinus
APC94352      170 LRLQESLKQLkp----ddPAVAFKALGPRe-NLRSVLKEVQSSgvaHFILDCeaerIMDILRLAKELkllseFHSYILTN 244  Pyrrhalta aen...
Feature 1                                                                                         
3H6G_A        228 LDlfaldvEPYRYSGVNMTGFRIlntentqVSSIIEKWsmerlqappkp------------------dsglldgfmttDA 289  Norway rat
KRT79265      236 WDaht-lnFTVFNTTANITTISLlntstsvLHYAVKEWndgmryki-------------------------rpdtvkaEQ 289  Oryctes borbo...
ANQ46493      258 LDaht-ldFSNLNTTANITTIRLhdpksddFLNTVHRWeltefenhnrr-------------------vpldpysiktET 317  Phyllotreta s...
KRT86253      244 LDaht-ldFNQLDCIANITTITItdtnsklTYGFAKECslgriiptns--------------------tdipttlvkhEP 302  Oryctes borbo...
KRT86243      239 LDahaldySDLKNNKANITTFRMiatnknsVRNVIRDWefmeeqfqrp--------------------ikidpesvklSA 298  Oryctes borbo...
ENN70425      233 LDahsldwSEFNEVVSNISSIRLmdhesdaAKNIGKLWridpk-------------------------------riktRM 281  mountain pine...
OWR43841      257 LDahtldlQELRYGLSNVTCLRIfdhsdgrTKSYLADWkartsndikm---------------------pkktheitiEA 315  Danaus plexip...
NP_001036373  243 LDthsidfGELSGVEANITTVRLmdpsdfhVKNVVHDWeerekregry--------------------fkvdpnrvksQM 302  fruit fly
CRL04875     1139 LDthtldiSQVQNRTANITCIRLvdinsdeLINALRVWrqreynfn------------------------mdekqvphEA 1194 Clunio marinus
APC94352      245 LDahtinwSEVKNIKSNITAMRLlnpdntnMKNAALVWnqnmkysfletvkdpvilkeiqnlrrmkhfkdiktiniqtKT 324  Pyrrhalta aen...
Feature 1                                                                                         
3H6G_A        290 ALMYDAVHVVSVAVQQfpqmtvsslqcnrhkpw---------------------rfgtrfmslikeahweGLTGRITFNK 348  Norway rat
KRT79265      290 AILHDATYFFVNAFYElrvtdratgfipeplycnnenflqtgfrtynymlsksieivgglavpilfgkeaALTAPIRFDE 369  Oryctes borbo...
ANQ46493      318 VLFHDAILLLTDTVNAmtikpginikplacngtet-----------------sddgftlrkymlintpsmTLTEPLKFND 380  Phyllotreta s...
KRT86253      303 SLMWDAANFFMNAFHElhltnhqvvrkltcdgeer-----------------gihsfglanymkirpipnTITGKINFEN 365  Oryctes borbo...
KRT86243      299 ALLHDALESFMTTFDQlsrtrileanplscdkktkft------------hgfeiagyhkvrphyngslfePLTGPIEFDS 366  Oryctes borbo...
ENN70425      282 ALIYDAVSVFITAFRDlsqkeqlqikpldcdrsevtey-----------gtkmyevikkpskqskpllsgYLTGPVLFDQ 350  mountain pine...
OWR43841      316 ALAGDAARLITDSVENapkqfkiaaqsiecntks------------------kwedgetftnhlltnpiqGITGRVQVDN 377  Danaus plexip...
NP_001036373  303 ILLNDAVWLFSKGLTElgifeeltapdlecrrkk------------------pwpfgkriiefikarseeTSTGRIDFNE 364  fruit fly
CRL04875     1195 ALVHDAVQLYFNGLQSighnyrfqktthncseprsg---------------sksnfgfqlinflknqefdGATGKVVFNN 1259 Clunio marinus
APC94352      325 ALMHDALNIFISTFSKldavypvafkalscesnetst------------ygqhfsdiltqinkenplllePLTGPITEFD 392  Pyrrhalta aen...
Feature 1                                                     
3H6G_A        349 t---nGLRTDFDLDVISLke---eGLEKIGTWDp--ASGLNMTE 384  Norway rat
KRT79265      370 f----GRRIDFNLYSVEIid---gKKEVIADWNpslNDTVNIHR 406  Oryctes borbonicus
ANQ46493      381 e----GGRADFNIHVVDIi-----DDSVIATWHa-gNESMELHR 414  Phyllotreta striolata
KRT86253      366 -----DHRSTLTLQVVEImq---gRLRKTAYWSa--ADPESVTV 399  Oryctes borbonicus
KRT86243      367 y----GRRSNFKLQVVELfn---gQFRQTGEWTs--EDSEHIKQ 401  Oryctes borbonicus
ENN70425      351 h----GQRRNLILQIVERskpvdgAFRLTGYWNsalPKNISYTV 390  mountain pine beetle
OWR43841      378 i---tGERTNFNVEVMELsn---sGFNSIAKWNa--KTGFDYAR 413  Danaus plexippus plexippus
NP_001036373  365 n----GQRSFFTLRFMELns---dGFLDLATWDp--VNGLDVLN 399  fruit fly
CRL04875     1260 ilpnkGGRTEFRIEILEMvk---dKFISIGHWDt--TEKVVVNR 1298 Clunio marinus
APC94352      393 s---mGYRKNYKLQIVEWvg---dRFRISGTWDpalPEKINLTI 430  Pyrrhalta aenescens

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