Conserved Protein Domain Family
PBP1_iGluR_NMDA_NR3

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cd06377: PBP1_iGluR_NMDA_NR3 
N-terminal leucine-isoleucine-valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-D-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in the treatment of chronic pain.
Statistics
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PSSM-Id: 380600
Aligned: 8 rows
Threshold Bit Score: 475.769
Created: 11-May-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative trimerputative
Feature 1:putative trimer interface [polypeptide binding site]
Evidence:
  • Comment:based on sequence similarity to the Xenopus laevis NMDA receptor GluN1/GluN2A/GluN2B

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
AAS87020    29 VLARLGGSVRLGALM-PRAPLARARARAALARAala-------------------------------------------- 63   human
ERE72363    24 VLFDVGITSVTMDLA-EHHMFCGGSDGTIFQVDlcs-------------------------------------------- 58   Chinese hamster
CAF93757    18 VLKRIGHTVRVGVLH-VHPRPLPGPEGWDAEPPlpglgasghdglrtgssasgprgssrdqnrar--------------- 81   Tetraodon nigrov...
OCU00928    39 ILKRIGHTVRIGAVQ-LQPWKTRGITTQFSRVWpdidaglqkidagrdqdvgetegtegesklrdrakrelagptlerna 117  African clawed frog
OWK52542    34 LGPSPGPTVRLAALLpPAPARARLRAALARAAGtgtgp------------------------------------------ 71   Bengalese finch
OCU00476    29 ILARIGHTVRLGALL-PSYGHTQTRIQNVLSRIsrt-------------------------------------------- 63   African clawed frog
Q8TCU5      40 ILKRIGHAVRVGAVH-LQPWTTAPRAASRAPDDsragaqrdepepgtrrspapspgarwlgstlhgrg------------ 106  human
NP_579842   31 VPTRAGASVRLAALL-PRAPAARARVLAALATPap--------------------------------------------- 64   Norway rat
Feature 1                                                                           ####   #  #
AAS87020    64 ----------------------------------prLPHNLSLELVVaa-----------------ppARDPASLTRGLC 92   human
ERE72363    59 ----------------------------------wpGQREHSFRPDQnv------------------gKVFKGHRNQVTC 86   Chinese hamster
CAF93757    82 -----rregnaaresrvfaprdsvlaaveavnraelLPFNLSLEAVVavgsglgglpaspsssaggaePEDPLSFVESVC 156  Tetraodon nigrov...
OCU00928   118 khgprsfiayrgrddllfprealllavenlnrvpglLPYNLSLEVVMaieaglgdlpmlpfsasssswSSDPVSFLQSVC 197  African clawed frog
OWK52542    72 --------------------------------gevtLPHNLSLEVVGgg-----------------paARDPGSLARWLC 102  Bengalese finch
OCU00476    64 ----------------------------------swLPYNLSLEVVSga-----------------prDRNPASLTRWLC 92   African clawed frog
Q8TCU5     107 -ppgsrkpgegaraealwprdallfavdnlnrveglLPYNLSLEVVMaieaglgdlpllpfsspsspwSSDPFSFLQSVC 185  human
NP_579842   65 -----------------------------------rLPHNLSLELVAva-----------------spTRDPASLARGLC 92   Norway rat
Feature 1                                       #                                              
AAS87020    93 QALVPPGVAALLAFPEARpel----lqLHFLAAATETPVLSLLRrearap------lgapnpFHLQLHWASpLETLLDVL 162  human
ERE72363    87 LSVSTDGSVLLSGSHDESvrlwdvkskQCLRTVTLKGPVTNAAImlappsmlnpefrpslplPHFNKHLLGaEHGDEAQG 166  Chinese hamster
CAF93757   157 HSVVVQGVSAMLAFPRNRdef----vkLDFVSQALQVPVVSVVRreftr--------hsqnwLHLQMPMVPvAAEAEPLL 224  Tetraodon nigrov...
OCU00928   198 HTVVVQGVSAILAFPQNKgem----leLEFISSTLHIPVVSIVRsefsr--------rsenpLHLQLSIENaLTSNAEVT 265  African clawed frog
OWK52542   103 GALAGRGVAAVLALPRSRrel----lqLDFLAAALQVPFVSILDtrwplp------fraqspFHFHMDRQSsPEMLVDVL 172  Bengalese finch
OCU00476    93 QVLVAQGIAAVLAFPQSQeel----lqLEFLSSVLEIPFISILEqeqilp------lttknpFHLQMDTQSsVENLMDIF 162  African clawed frog
Q8TCU5     186 HTVVVQGVSALLAFPQSQgem----meLDLVSLVLHIPVISIVRhefpr--------esqnpLHLQLSLENsLSSDADVT 253  human
NP_579842   93 QVLAPPGVVASIAFPEARpel----rlLQFLAAATETPVVSVLRrevrta------lgaptpFHLQLDWASpLETILDVL 162  Norway rat
Feature 1                                                                                      
AAS87020   163 AAVLQa---HAWEDVGLALCRTq---DPGGLVTLWTSRA--GRPPQLVLDLSRRdt---------gdAGLRARLAPMAAP 225  human
ERE72363   167 GGLRLqlglHLQVGPTQPLLQSiespSPAHTPLLLQNMLgnQMLPARVLELEEEv------------RSLRKINRDLFDF 234  Chinese hamster
CAF93757   225 LWLLMr---NGWWDVRVLLCRNr---DLTSFLLLVRNHT--RFQLGPLVNLSVAppsssspggrdqqQALLQQLEALRDP 296  Tetraodon nigrov...
OCU00928   266 FSILTm---NSWYNYSILLCQEd--wNITDFLTLTQNNS--KFHLGLIINITVNltls-----nyviSYLQLNLDSIKDT 333  African clawed frog
OWK52542   173 VSVLQa---NDWQESSLVLCHPw---DIDGFLDLWAQRS--QLFLRTVLDLGYLdep-------ratRYLQQHGDRVRTL 237  Bengalese finch
OCU00476   163 FSVLQn---SSWEEVDIITCHPw---DSASIQRYLTTNT--TLVCRTILNIHPVdes-------alvPFLQQHFESTKNP 227  African clawed frog
Q8TCU5     254 VSILTm---NNWYNFSLLLCQEd--wNITDFLLLTQNNS--KFHLGSIINITANlpst-----qdllSFLQIQLESIKNS 321  human
NP_579842  163 VSLVRa---HAWEDIALVLCRVr---DPGSLVTLWTNHA--SQAPKFVLDLSRLds---------rnDSLRAGLALLGAL 225  Norway rat
Feature 1                                                                                      
AAS87020   226 vggeapvpAAVLLGCDIARARRVLEAVPPG------PHWLLGTPlppkaLPTAGLPPGLLALGEvarppLEAAIHDIVQL 299  human
ERE72363   235 s------tRIITRPSNAARAHEVLEAAPPG------PQWLLGTPlpaeaLPTAGLPPGVLALGEikrpsLEAAIHDTVEL 302  Chinese hamster
CAF93757   297 pa-----aALVTFGCHVREVRRLWALAARLml--peFHWVLGDGqevggLRAEGLPPGLLAHGLagppsLDQYVQDALEL 369  Tetraodon nigrov...
OCU00928   334 t------sTIVMFGCDMEDTRKIFEMATQYgimlpdFHWIFGDSqnveeLRTEGLPLGLIAHGKttesyFEHYVQDAMEL 407  African clawed frog
OWK52542   238 s------sPVLMLGCDLHRARLIFRAAEELglppqeLHWMLGFPlstseLQTEGLPPGLLAFGEvsrppLELFVQDMVGL 311  Bengalese finch
OCU00476   228 q------vPMLLYGCDARRSSLVFHVARDCgleaheFHWMIGQPlnveeMKTEGMPPGLLAYGEisrptVEKFIRDAVGL 301  African clawed frog
Q8TCU5     322 t------pTVVMFGCDMESIRRIFEITTQFgvmppeLRWVLGDSqnveeLRTEGLPLGLIAHGKttqsvFEHYVQDAMEL 395  human
NP_579842  226 egggtpvpAAVLLGCSTARAHEVLEAAPPG------PQWLLGTPlpaeaLPTTGLPPGVLALGEteqhsLEAVVHDMVEL 299  Norway rat
Feature 1                                              #                                       
AAS87020   300 VARALGSatqvqPKRALLPAPVNCGXlqpagpespGRFLARFLANTSFQGRTGPVWVTg-SSQVHMSRHLKVWSLRRDPR 378  human
ERE72363   303 VARALSSmalvhPEHVLLPAVAGCEDlkpggsessGQTLVRFLSNTSFQGRTGTVWVTg-SSQVHVSRHFKVWSLRRDPL 381  Chinese hamster
CAF93757   370 VARAVGSaaladAALALSPATTDCLEerrg-rgssGMYLSRFLSNTSFDGRSGFVSAGggAGALLSEARHYVWSLQLDPL 448  Tetraodon nigrov...
OCU00928   408 IARAVATatmdrPELALIPSTMNCMSasst-nltsGQYLSRFLNNTTFSGISGHIKVKe-FSIINSENHYFIWNLQHDPV 485  African clawed frog
OWK52542   312 VSQAIAHaarglPDPTQLQTTGNCNErhraggespGLFLARFLANTSFHGRTGLVRVEn-TALVRPEQQFRIWSLRRDSQ 390  Bengalese finch
OCU00476   302 VTRAISAavhvrPDLALIQSMVNCNDkqtkqsessGMYLSRFLANTSFSGQTGQIYVA--NNQIHTEHHYRIWSLVRDSL 379  African clawed frog
Q8TCU5     396 VARAVATatmiqPELALIPSTMNCMEvett-nltsGQYLSRFLANTTFRGLSGSIRVKg-STIVSSENNFFIWNLQHDPM 473  human
NP_579842  300 VAQALSSmalvhPERALLPAVVNCDDlktggseatGRTLARFLGNTSFQGRTGAVWVTg-SSQVHVSRHFKVWSLRRDPL 378  Norway rat
Feature 1                             
AAS87020   379 GAPAWATVGSWrdgqldLEPGGA 401  human
ERE72363   382 GAPAWATVGSWqdgqldFEPGAA 404  Chinese hamster
CAF93757   449 GQPTWTRMGRWrrgkvvMDQGAW 471  Tetraodon nigroviridis
OCU00928   486 GNPMWTRLGSWqdgkiiMDYPLW 508  African clawed frog
OWK52542   391 GVPTWMTVGTWshgkleLEEVAW 413  Bengalese finch
OCU00476   380 GDPTWVTVGGWregrmeVEESLW 402  African clawed frog
Q8TCU5     474 GKPMWTRLGSWqggkivMDYGIW 496  human
NP_579842  379 GAPAWATVGSWqdgqldFQPGAA 401  Norway rat

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