4JOQ


Conserved Protein Domain Family
PBP1_ABC_sugar_binding-like
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cd06311: PBP1_ABC_sugar_binding-like 
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periplasmic sugar-binding domain of uncharacterized ABC-type transport systems
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Links
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Statistics
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PSSM-Id: 380534
Aligned: 10 rows
Threshold Bit Score: 310.836
Created: 11-Jul-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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putative ligand
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic transport protein receptor for D-glucose and D-galactose
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                 #                                                                   
4JOQ_A      9 TIGIAIPsATHGFXGGLNFHAQDTIKRLqevypQLDFVLATag-naGKXVNDIEDXVATrNISALVVLPfesepLTSPVQ 87  Rhodobacter sphaer...
OAM92531   41 LIGICVVgADHGWSAALSYYAEKKAKEL-----GLNYKLVTss-naNQQVSQMEELINL-KSKAIVFLPhn-neLDVIAQ 112 Pelosinus fermenta...
ARU40530   45 KIAVSIPtATHGWTAGVVDWAEKAKEQFa---sDADITIYAse-svDDQADKLGTLATQ-GYDGLVILSfdpaaVTPAVK 119 Armatimonadetes ba...
KXK09653   42 TVAISIPsGDHGWTAGVNYWAEEVQKMYp----DITWLYQKad-nvEQQRTQVENMLAQ-KPDALVILChesgpLDGIGK 115 Armatimonadetes ba...
OHE64718   26 KIGISIPsADHGWTGGVVYYSQMAIKDIaakdkNVEFTLSLad-spQKQVSDVEDLVVK-GVNAIVVLAydsatVTPAIK 103 Treponema sp. GWC1...
CNG69440   59 TVGFSAPaADHGWIAAIAKNAEAQAEKYk----DVTFKPVEptndiNQQISAVESLIRA-KVDVLVILPndgeqLNQVAR 133 Mycobacterium tube...
SNX67180   39 KIGILAPaVTHGWVAAVAYHAEARAKELs---dEIEYQIQTss-naEEMTSQLDDLMTW-GADAIVAFPqw-egMEVPIQ 112 Bacillus sp. JC228
KGK84213   42 VIGISVPaATHGWVAATAYYSEKKAKEL-----GLEYKLVVsa-npSEQAGQLDELIAM-KPAAIVLLPqn-deVTVAAQ 113 Clostridium sp. HMP27
GAX02486   44 TLAVVIPsSDHGWEAGVNYYAQQQVKKLg----LKKYKIVTss-svNEQASQIDDMISQ-KVGAIVLQPqt-deVSTAAK 116 Lactobacillus sp. ...
GAP12670   56 KVGILAPaVTHGWVAAVAYNAEARCKELs---dQIEYKLYTss-naEEMTTQLDDLLTW-GAQAIVAFPqw-egMEVPIQ 129 Longilinea arvoryzae

Feature 1                 #                                                        #          
4JOQ_A     88 AVKEaGIWVTVVDRglsvegiedLYVAGDNPGFGRVAGEYFAqhl--esgKKIVVLRGIpt---tLDNERVEAFTAAIeg 162 Rhodobacter sphaer...
OAM92531  113 KVVDaGIPLINFDRkvnv--nttSYVAGNNYNMGVKSAEYIGkkl--ggqGIIAAIEVPnv--gsVNVERMEGFKKTIae 186 Pelosinus fermenta...
ARU40530  120 MNRDsFGYIVSVDRglae-piadVWMRGDNMKFGSEAAKFMAekl--ggkGNILVLRGMag---pVDEDRVKGFEEVMkg 193 Armatimonadetes ba...
KXK09653  116 QAKDqGVYIVSVDRgfkdpaiadLFVEGDNVAFGRKSAEYVVgkl--ngqGNLLVFEGAts---tVNDDRVAGAMEVFga 190 Armatimonadetes ba...
OHE64718  104 KAKEkGIYIVSVDRglte-evqdVYLAGDNPGLGRVSAEYMGkam--ggkGKMVILEGIpc---vINSERVDTFKAIIkt 177 Treponema sp. GWC1...
CNG69440  134 KAMDaGIPVVNLDRvfpdklsyrTWIGGDNYGMGVSAGHYIGkklkdkgvSDPVIVEIQgiatlpLTQERSKGFEEALks 213 Mycobacterium tube...
SNX67180  113 RALDeGIEVVNFDIvida--dgvYRVAGDNYDMGVQGANYIVdki--gteGNVVILEVPsa--gsVSELRKNGFVETIee 186 Bacillus sp. JC228
KGK84213  114 KVLDaKIPLVNFDRkvnv--dstAYIAGDNVGIGVESAKYIGekl--nkeGSVVIVGVPsw--gaINTERINGFKDYVsk 187 Clostridium sp. HMP27
GAX02486  117 KIVKaKIPLVVFDRkvda--kytGYVAGSNPQIGQLSAKKIGdtl--kgkGTVAVLNVPss--gsVSAERTAGFKKVMkk 190 Lactobacillus sp. ...
GAP12670  130 AAIDkGVTVVNFDIeina--tgvYRVSGDNKDMGIQGAKYIVdki--gktGTVVMLEVPts--gsVSELRKAGFVETMad 203 Longilinea arvoryzae

Feature 1                                                                           #         
4JOQ_A    163 --sgIEVLDXQHGNWn--rDDAFNVXQDFLSky--pqIDAVWAADDDxAIGAXEAIAQAGRteeXWVXGGAGXKEIIRRI 236 Rhodobacter sphaer...
OAM92531  187 k-fpNIKYRSYASNSms-rEDALKVTPDVLTan--phLDAIFTIDDEvALGVYRAIKEQKRtdiKVITGGGGCQEYFNLM 262 Pelosinus fermenta...
ARU40530  194 f-pdIKILAMQPGDWn--qDKAFTVTQNLLLkh--kdVNAIWAADDDmALGAEKALTEAGLs-dVWMVGGGGSKVVVKRV 267 Armatimonadetes ba...
KXK09653  191 n-pgIKILKRQQSNWn--aEKAFNDAETILVefagqkIDAIWAQDDDmAEGIERALKEAGRt-dLWMLGGAGKKTIVKRV 266 Armatimonadetes ba...
OHE64718  178 kfpgIEILESQPADWs--tQKGLEVMQTFLQky--kqIDAVWAQDDDiLKGVLQAYKESGRkdiKLMVGGAGSKEMIKTV 253 Treponema sp. GWC1...
CNG69440  214 --ygFSVTAKQDAKFt--vESGNQVATNLLQah--kkIDAMWNHDDDqGVGVLAAIKQSGRd-eFFMVGGAGSANAMREI 286 Mycobacterium tube...
SNX67180  187 i-apDMNLLTYATQFt--rEDGLKDFADILTsn--pkIDAVYSMDDEtSIGVLQAISEAGRtdiKVVTGGGGMQEYFNMM 261 Bacillus sp. JC228
KGK84213  188 n-lpNIKIINEYGAAtaasQDGLKVMADALTan--kkIDAVFSVDDElSIGIQKALEEAKRtdvKVVTGGGGMQAYFNLI 264 Clostridium sp. HMP27
GAX02486  191 sypdIKLVNMTADDFt--qEKGLKAATDMLQsn--kkVDGIFSIDDEsSIGILQAVKDAKRtdiKIISGAGGDQAYFKQI 266 Lactobacillus sp. ...
GAP12670  204 i-apDMNILTYATKFt--rEDGLKDFADILTkn--pqIDAVYSMDDEtSIGVLQAIKEANRtdiKVVTGGGGMQEYFKMM 278 Longilinea arvoryzae

Feature 1                 #                                        
4JOQ_A    237 Adg-dPQLPANVTYpPAQISTAIELTAlklvs------stpvsGRFIIGSQLV 282 Rhodobacter sphaeroides ATCC 17025
OAM92531  263 Gse-kEIYLESATYsPAMIMDAVQIAAdlvkn------gkkpeKEVILDTEIV 308 Pelosinus fermentans DSM 17108
ARU40530  268 Mdg-dKMFPATVTYsPKMIELAIARMVadlkagk---kpsgtqVDEVLPVDLV 316 Armatimonadetes bacterium Uphvl-Ar1
KXK09653  267 Mdg-dPLYPADITYpPSMIATGIHLAVanlrdgqldrirpfmpRHVKIDVELI 318 Armatimonadetes bacterium OLB18
OHE64718  254 MdgsnPMIPVDVTYhPSMVYPAINLAVlgvrgq-----nlggfIQQKIPSKII 301 Treponema sp. GWC1_61_84
CNG69440  287 Ksg-gGVLQATVTYpPTMAASAIKLGRliaqgk-----gmtdlVELQVPQSVT 333 Mycobacterium tuberculosis
SNX67180  262 Pen-eDIWIQSALYsPAMVKDAVDVALkvlng-------edveMETIIPTTIV 306 Bacillus sp. JC228
KGK84213  265 Kaq-dKTWYASALYsPSMIQDAVQIAKdiidg-------ktpeKTKIIPSVVV 309 Clostridium sp. HMP27
GAX02486  267 Kag-gDITKFTATYsPAMIGDAIKLANqkmng-------kdikKDTIIAPTIV 311 Lactobacillus sp. IWT25
GAP12670  279 Pen-qNIWIESALYsPAMVKDAVDMALsilkg-------ekvdPVKIIPTTLV 323 Longilinea arvoryzae

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