3HCW,3K4H,3HUU


Conserved Protein Domain Family
PBP1_MalR-like

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cd06294: PBP1_MalR-like 
Click on image for an interactive view with Cn3D
ligand-binding domain of maltose transcription regulator MalR which is a member of the LacI-GalR family repressors
This group includes the ligand-binding domain of maltose transcription regulator MalR which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Statistics
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PSSM-Id: 380517
Aligned: 40 rows
Threshold Bit Score: 252.119
Created: 25-Jan-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand bindingdimer interface
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:3K4H; Bacillus cytotoxicus transcription regulator binds maltose, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      # ##                                               ###         
3HCW_A      9 KIGLVLkgsee--pirlNPFYINVLLGISETCnqhgYGTQTTVsnnmNDLMDEVYKMIKQRMVDAFILLYSken-dpiKQ 85  Staphylococcus aur...
3K4H_A     10 TLGLVXpssas--kafqNPFFPEVIRGISSFAhvegYALYXSTgeteEEIFNGVVKXVQGRQIGGIILLYSren-driIQ 86  Bacillus cytotoxic...
KRL54853   61 TVGVVFqpqns--kisgNDFVLHELFGINQQLqsfnYLLATATgnswGEVFESVKTMVQAGKVRRFILLYTteh-dpiTQ 137 Lactobacillus olig...
KRN89643   61 TIGVILpvmks--esdeDLFYMQIMQGIVRMCnahgYTVSLATgkttDEVIHNVESLSRRGQLKRFIFVYSkkedpvlEY 138 Lactobacillus ceti...
AMK53308   62 TVGIILpssrt--ssfeNPFFLEVLRGITQLCnekkVLTALITgkddAELLDSVQAHARNRLVNAWIVLFSred-dpvVD 138 Erysipelotrichacea...
SJZ65213   61 AVGVIFpptey-gertsSPFFMQILSSINQEAinnqYTVAIATgrspEQLLENTKLMYGQKRVDGFILLYAnnn-dpvRE 138 Pilibacter termitis
CRH91369   61 AVGIILpvrviqdslgnNPFFMQIIQGIAGVCtdngYMVSLATgrsdDELLKNVQNMIRSGHIGKLIFLYSktd-dkvFD 139 Chlamydia trachomatis
CUO83948   57 DVGVVFprfmv--dvyeNPFYLEIVRGISYMCnkgrYSLHIIT----GADTREMKTSMEIADCEGYIFLNTkie-ssvTD 129 Roseburia hominis
SFE94507   62 TIGVILpvgtm-gnpaqNPLFLEMIQEIGVVCneqkYMISLATgktmAELKDSVRLMHQRKLVDGFILLYSeak-dpiRK 139 Trichococcus paste...
SFD99594   57 TIGVVFprsmv--dvyeNPFYLEIVRGISYLCnkehYTLNLIT----GADFREIKNSIEIANCEGYIFLYAdin-ealTH 129 Sharpea azabuensis
Feature 1                ##             ## #                                  #               
3HCW_A     86 MLIDESMPFIVIGkptsdidhqftHIDNDNiLASENLTRHVIeq-gvDELIFITEkgnfevSKDRIQGFETVAsqfn--- 161 Staphylococcus aur...
3K4H_A     87 YLHEQNFPFVLIGkpydr-kdeitYVDNDNyTAAREVAEYLIsl-ghKQIAFIGGgsdllvTRDRLAGXSDALkladivl 164 Bacillus cytotoxic...
KRL54853  138 LLKEFKARVVVTGepqan--tqtlYVDNDNfNASKQATELITnhfklNHPIFIRTqgnwlfEDNRELGFKSVWpt----- 210 Lactobacillus olig...
KRN89643  139 LKKQAQVKYVVVGaapdchdqdlySVDNDNvAVGQEATEFLLek-gyQNICYVYTdlnnhvQAKRYRGYQKAMkend--l 215 Lactobacillus ceti...
AMK53308  139 YLYDEGIDYVQIGqpssh-pnetvAVDNDNiAAGQEAARYLTgl-ghRTFAFVGSdprhrfSTARCSGVRLQLqeqgldl 216 Erysipelotrichacea...
SJZ65213  139 YLRKQKIPYVVIGtpndf-enettYVDNDNqLLGKNAVDALVer-ghERIMLVVEsmdnswVQDRYYGYIRGMrhygl-d 215 Pilibacter termitis
CRH91369  140 FVKKQAVDCVVVGqsyatdngnakFVDNDNrQAGYDAAAFLLer-gfKQITYAYTdmdelvQAERFIGYAEKMtsqg--l 216 Chlamydia trachomatis
CUO83948  130 YLRERMIPYIMIGkppmn-sitsvSVDTDNiQAGYEAVKYLFkk-ghQKIGYIGEkkdaqySIDRRLGYIQALseagyev 207 Roseburia hominis
SFE94507  140 FLHDEKIPYALLGkpdvy-enetiYIDNDNrLSGKSATDCLIqh-ghQRIGYVGLtpsqvvDKERYKGYSDALrda---- 213 Trichococcus paste...
SFD99594  130 YMVEHEIPYIVIGkpamq-svtslSVDTDNvQAGYEAVKYLIsk-ghKKIGYIGAekhaqyALDRRIGYTQAIteagypl 207 Sharpea azabuensis
Feature 1              #                             #                           #            
3HCW_A    162 ldyQIIETSNEr-EVILNYMQNLHTrlkdpnikqAIISlDAMLHLAILSVLYELnieipkdVMTATFNDSylteiasPPQ 240 Staphylococcus aur...
3K4H_A    165 pkeYILHFDFSr-ESGQQAVEELXGlqq---pptAIXAtDDLIGLGVLSALSKKgfvvpkdVSIVSFNNAllseiasPPL 240 Bacillus cytotoxic...
KRL54853  211 --aQVLKLSESf-SDQKQQLKEYFEqhp---evdGIVAsDDKIALLAQLQGEMYlks-hpqLPTIGFNASeyvqlskANF 283 Lactobacillus olig...
KRN89643  216 pamSLKMQVTDh-DLNVRLFNHFMQknp---dchGFVIvNDLIGIRMQQVFDILsln-ekqYGLITFDNTvlaelarPTL 290 Lactobacillus ceti...
AMK53308  217 rpaTVAQVDVD--DPRALEIMEAALfpktgprptAVVAaDEMHAVLVRHICQEKgleiprdLSLISFNNSivstivsPAL 294 Erysipelotrichacea...
SJZ65213  216 tfeTIVLDRKE--PMTILAFQESIRnyr----ptALIVvDDILSLRVIQLLQMSnvlvpddISVISFNNSiyaklihPYI 289 Pilibacter termitis
CRH91369  217 taqTINLSSETe-QDIGQRIQKFLAnhp----qpTFVTcDDMLAIHLQRLLKQNhpn--qkVPMISFNNSilaelatPSL 289 Chlamydia trachomatis
CUO83948  208 kedYIKNLSSSy-SYNPNEILELLRsde---cpsAFVVcDDIYAVIMVRLITEVgkkvpddISIVSFNNSifarfsePPL 283 Roseburia hominis
SFE94507  214 -nlTVHPELYFetPDDFMAFQEFLEetk----ptGLVVgDDRLALRVLQYLQLDqykvpddISLISFNNSvfatlshPFL 288 Trichococcus paste...
SFD99594  208 rdnYIHTLSSSy-TYSPDDILSLLRsen---cptAFVVcDDIYAVIMTRLIDEVgkrvpddISLISFNNSifarlanPPL 283 Sharpea azabuensis
Feature 1              #                                 
3HCW_A    241 TCIDIKpRMLGQQAGSAILnilknk---aqdviELVIIDTELK 280 Staphylococcus aureus subsp. aureus Mu50
3K4H_A    241 STVDVNiYQLGYEAAKALVdkven----aestaKCIIIPHKLL 279 Bacillus cytotoxicus NVH 391-98
KRL54853  284 YSVDVQpDILGVESVKLLFndkcs-----dsnlNNIMVPYKLP 321 Lactobacillus oligofermentans DSM 15707 = LMG 22743
KRN89643  291 TSVELFpHFLGTESAALAMsldqkeseqsyqmqRNIIVPHRIM 333 Lactobacillus ceti DSM 22408
AMK53308  295 TSIDINaRQLGIEAALQAIkhldn----pdlmpSRTLVPFQLI 333 Erysipelotrichaceae bacterium Alo17
SJZ65213  290 TTFDIHvEELGRVALKRLTeevkge---tqmrhVKVIIPHSLK 329 Pilibacter termitis
CRH91369  290 TSVEIFpYQLGEKAATLVLatdh-------iqdTIHLIPHQIV 325 Chlamydia trachomatis
CUO83948  284 TSIDVSpNQLGMEAVVQLIkhiet----ptmfaTRSIVPFTIR 322 Roseburia hominis
SFE94507  289 TTIDIHvQELARQAAALLIrqlhe----psallPKMIVPHEVI 327 Trichococcus pasteurii
SFD99594  284 TTIDVNpNQLGMEAVVQIVkhiet----ptmfaTRTIVPFTIR 322 Sharpea azabuensis

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