4RK5,4WXE,4RK4


Conserved Protein Domain Family
PBP1_CcpB-like

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cd06286: PBP1_CcpB-like 
Click on image for an interactive view with Cn3D
ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species
This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. Catabolite control protein B (CcpB) is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Statistics
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PSSM-Id: 380509
Aligned: 62 rows
Threshold Bit Score: 245.148
Created: 10-Jan-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand bindingputative dimer
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:4RK5; Lactobacillus paracasei transcription regulator binds sucrose, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       #                                                #                 
4RK5_A          11 NIGVLVsrvtnpFFAGLFDAIERELhahgYQVXITQTyddpEAEERFLKQLKSRELDGVILASVEAPDRVXAVAkafPGR 90  Lactobacillus...
SDI80090        61 CIAILIpnldhpYFSQLVRYISAACykkgFKTVIHQTfsnkYTERDVYTQLQRNEFDAIILASFSLPEEAIARYt-eNNI 139 Alteribacillu...
BAS46922        60 SVAISIpyidhpFFSKISYELTKNFnekgYKSFIHQTfcspSKEEEVLMSLEKNEIDAVVLCSIENSADVIEEYs-kSGL 138 Staphylococcu...
GAF20485        61 SIGIIIpylshpYFAELAGVLSEEShnygYKPVLFQTfgdrHQEIDVFEKWKRKELDALIITSSSLNQVELDEMs-mNGI 139 Bacillus sp. ...
jgi:Spiaf_1026  65 RIALVIedaahpFYSSLIAGVGAAAarlgHDILVQQVrgeaWHPGRLMQLVVTRAVDGVIIASELSPWSEYGDWl-tDFP 143 Spirochaeta a...
SFG13267        41 VIAAIIkridhpFMSGLMQGIGEVAlrkgYQIMVCQTrlqaREELRFLHLLQTKQVDGILLEDMQNDWKEVAPYa-aCGS 119 Planifilum fu...
GAU63152        61 TLAVIVplisnpFFSRLVQTMGIEAeklgYKLLICQSrhdlKDEKNFLDLLKTRQVDGIVMASVRNSWEFIKGYl-qYGP 139 Tepidibacillu...
SFJ64137        61 TIAVLLprltnpFFGNLIEAIEEKAsewgYQVIVCQThdskKKEMDYLQLLKTKQVDGMIMASLVNEWKDVEPNl-eSGP 139 Halobacillus ...
CAA74475        61 TIALSVpsidhpFFAQLIKGVSHEVlfknYKVIVFQTfydkQTELELLELLKHKEVDGIILGTLENEWDQISPFl-kYGP 139 Bacillus subt...
KRM35463        55 TIGVVVpeiinpFFSYLINAIERTVdklhYKTLIIQTfgrkQNELTALDYLKRHQVDGIILCALENDWDIIKGYq-kYGQ 133 Lactobacillus...
Feature 1              #                                        #                #                 
4RK5_A          91 VVVVNadvqi--pgatSLVLPHyQATRDALDYLFnqGHRRFAYVSGgtis-----gahhGQSRTQAFLDFxqahqllvaq 163 Lactobacillus...
SDI80090       140 IVACNedysg--dyfdVFCLDEeEVTMKATSYLLnkGLSKLAFCSDnit-------splQQARLKGFILAhtkkglhhtk 210 Alteribacillu...
BAS46922       139 IISCNdtnqt--ksvsNFHFDEyNIAKAATEYLLekGIKNIAICIDnpf-------ngaQKLRLDGYKKAlsknkisfrk 209 Staphylococcu...
GAF20485       140 LVICNeayks--skvdVFCLNEkHAAYKSVVYLIkkGRRKIAFCSDyla-------spsQQERLLGYKLAhqehkltwde 210 Bacillus sp. ...
jgi:Spiaf_1026 144 LVTCDqalqh--adlpGVYIDHrQSTLDGLHHLYeqGARNILCLHTtpts-----pcssNTIRLTAFQEFaegyp-naai 215 Spirochaeta a...
SFG13267       120 LVLVNsyeek--anvpMVYVNNyNGARQALLHLVekGHRAIAVCLAkrnnt----lctvQGPRWRAYQDVlaeagieins 193 Planifilum fu...
GAU63152       140 IILCNeyftdsdaaipIVKVDQkQGGYLSAKHLLklGHKRIAFCISdne-------srsGLERKEGFLQAlkefnltfnd 212 Tepidibacillu...
SFJ64137       140 IVFCNeymde--scipMIHMDHkQAAYEATSHLLneGCRQIAYVSGgpe-------shlSRKRKEGFIEAieqhglsfqe 210 Halobacillus ...
CAA74475       140 ILLCNeyhhs--aditIIGYDEfEAAYMGVVHLIerGHKKIGFCFDtpy-------seaQCQRKEGYLKAlqdynlhhrs 210 Bacillus subt...
KRM35463       134 IAVCNeyvde--dtipMVIGDQfNGLRQGTEYLIskGKTKIAYCTGrdslllqqrgknfDSDRYLGFTTAlqahdlsfnp 211 Lactobacillus...
Feature 1                 #                            #                           ## #            
4RK5_A         164 dLLFGQIHt--aKEGQAVGKQLASlapnvrPDAVFTNSDEVAVGVIDSLLAAdvkvpddIAVXGYDDQpfapfakIPLTT 241 Lactobacillus...
SDI80090       211 dFVFNKISn--iEDGIILGERIFKdr--leIEGIIAGSDFVAAGLISSAVKNhieipkqLSIIGFDNHpislvtnPQIST 286 Alteribacillu...
BAS46922       210 dYLFSSAFt--iNDGIKIGMKIREky--kdIQGVYTGNDFVSAGVKKVLGDE-------IFLIGTDNHdickitsPQLPS 278 Staphylococcu...
GAF20485       211 hLIFDKIAs--iHDGYMLGKKLHQtn---dIDAIFAGSDFVAAGYLKAAHECglsvpteLSIIGFDNHsisdvtsPAITT 285 Bacillus sp. ...
jgi:Spiaf_1026 216 aTQQVSDDl--lHNGEEVFAAYTAga--fpFDAVFCGSDDLAAGILMAARKRgiaipeqLKVLGFDDQpla--evLGIST 289 Spirochaeta a...
SFG13267       194 rYVFENVGtsnvLSGKELFRAIREms--nkPTALFTGSDQVAAGFILEAQRHgvripedIAVVGFDNQpia--elMDITT 269 Planifilum fu...
GAU63152       213 sLIMNNAFd--iTSGREIFYRLRSlp--epVTAVFTGSDEVAVGIISEAKKNgvripedLAVVGFDDLpiakiiePNLTT 288 Tepidibacillu...
SFJ64137       211 eLAIDWAMd--vNDGQKVFRLLKNel--phVDGVFTGSDEVAAGLIYEASSSdwnipedLAVVGFDNQmlsllmvPSVTT 286 Halobacillus ...
CAA74475       211 eWIFGEMFn--iEDGFRVFHKIKDlk--drPSAIFTGNDQVAAGIIKQAMKNgfkvpedLAVIGFDNQlicqvvtPTITT 286 Bacillus subt...
KRM35463       212 aWLFTNAHs--iEDGQAILKQLSQma--qkPDAIITGSDEVATGIVSLAKSLniqipqdLSVLGVDDQplakflsYPLTT 287 Lactobacillus...
Feature 1            #                                      
4RK5_A         242 VHQPvASXAAAATHEllkglg--rqvaqdTQPTLHLSLKIR 280 Lactobacillus casei ATCC 334
SDI80090       287 ICNHiQDMSNDLVNHivnkin--gikkspIKKVYNGEIINR 325 Alteribacillus bidgolensis
BAS46922       279 ISLPiENMAKDICNHmierlt--knnnevMNKIYSYEIVSA 317 Staphylococcus schleiferi
GAF20485       286 MTNQvQEMAKDLVHAlelrls--gqskpfERKHYESKLLIK 324 Bacillus sp. JCM 19047
jgi:Spiaf_1026 290 IHQPvRTMGERALEHliqctt--spgthpRSIQIAYRLIHR 328 Spirochaeta africana DSM 8902
SFG13267       270 VYQPtREMGEHASEIlfrlie--gspvdpSVVEMPHQLVVR 308 Planifilum fulgidum
GAU63152       289 IHQPiDKIATTSIETiiklveneidsseiRPIEFPLELIIR 329 Tepidibacillus sp. HK-1
SFJ64137       287 IEQPvKQMADKTVDVliqqllh-pgalapKRYIYPHQLLIR 326 Halobacillus dabanensis
CAA74475       287 IDIPvIELGQQAVLKiiesisg-naslnrRIIKLPTKLIIR 326 Bacillus subtilis subsp. subtilis str. 168
KRM35463       288 IRQPiTQMGQQVAEVlidnik--gttepaQKIKLDLQIVPR 326 Lactobacillus composti DSM 18527 = JCM 14202

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