Conserved Protein Domain Family
PBP1_LacI-like

?
cd06285: PBP1_LacI-like 
ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Statistics
?
PSSM-Id: 380508
Aligned: 31 rows
Threshold Bit Score: 264.859
Created: 10-Jan-2008
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative ligandputative dimer
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the LacI family.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                 ##  #                                            #                  
SDN68144   64 TVGVLVPRLsdtVMALLFEAIFSAAaarGLFALVSVcgddsaaearAVDSLLARRVDGLVLAtarlddp----------- 132 Actinomyces rumini...
KUO07356   61 TVGFIVPTVanpFYSVVVEEVETVLeerGYHLLLATtrgdgerarrHLTSLSNRSLDALLVAgdrdlge----------- 129 Streptomyces sp. D...
EFH84253   61 IIGLIVYPVdnpFFAEIVYTAETLAyaaGLRIFVTTltdddkmtqlMLKDLVARKVDGIIITcalspqi----------- 129 Ktedonobacter race...
OYU26253   61 TIALVVSSIanpFYPEFALQVERAArklGYFLLVCNtnddpaqeraYLDAVGGALSQGVIVMnadfvqlk---------- 130 Burkholderiales ba...
OJU80865   68 TVGVVVANLdnpYNARVIRGISRVLeddDFVPLVAEtgesrerferLLDHFGRRRVDALITSavrndgae---------- 137 Solirubrobacterale...
SDE37098   67 TLMVLVSDIsnpFYAEFFKGIEVHArgrGYTLLIGDtsenadtelvYSGMLGSNKADGVLLNtsempqgmi--------a 138 Loktanella pyoseon...
SEE66830   73 TIGLVVADIrsqFYPDLVASIQTAAeaaGYTLVLGSsgddpgreldIIRSMAHRRVDGVVLVavrsesd----------- 141 Jiangella alba
SDF85618   71 MVGLIVSDIrnsYFAEVARGVEDAAlesGRDVMLCNsdlnaerqmkSVNSLLDKRAEAIIMNsvaslsre---------- 140 Terriglobus roseus
OKP23044   63 SIGIISIVDqnpFFSELFFKLENECfkqDFTVISCFrhadk-edlhTYINLMSGRVDGIILIslkrdki----------- 130 Serratia liquefaciens
OUS78514   75 MIGVVVSNIanpYYADYILGIETKAkqfGKSVVICNgldyv-gaksNLELLLMQRVDGIIFTsfefdsirmqerfigele 153 Paenibacillus sp. ...
Feature 1                    #                #                                     #         
SDN68144  133 lpsslrdRQVPHVLALrtdg------vspSSVCDDeLGGYLATRHLLdlGHTAIAVLPGpdf--tstAQQRLAGYHRAMA 204 Actinomyces rumini...
KUO07356  130 hvpllerLGLPVALCMwdsep---psalpVVTVDFeKAGYLAGRHLCqlGHRRPVVIADvp-----aHRVRIEGMRRAFA 201 Streptomyces sp. D...
EFH84253  130 -vqelipPSLPVIYCLweged---lpnyaTVLFDFfEGGRLAAEHLFtaGHRQVGIVTHldnnnydhHVIRTNGFKSVFI 205 Ktedonobacter race...
OYU26253  131 alqelrqRGVPVVLCMwerpqe--ppplpCVAVDLyQAGVLAAEHLLrlGHRSLGAVVGsep--sgnHRWRLQGFMDTVE 206 Burkholderiales ba...
OJU80865  138 ilarklgDEVPVVLAVrglpd----tdfnTVRHDDeAGSTLAADHLAslGHRRVAQLPGpad--idaFNRRAGAFSAAAV 211 Solirubrobacterale...
SDE37098  139 qtqeqdgTGKPVVACTtire-----arvpTVRIDNdLGGAIAATHLLeqGHRNLLQVCGplq--hdaIHRRFRGFDQVLE 211 Loktanella pyoseon...
SEE66830  142 hieylrrRGIQIVLASrdlpd----lvadTVVVDSlAGGRAATRHLRslGHTRLAHVAGeat--vkpFADRARGFALETA 215 Jiangella alba
SDF85618  141 dqqkiaaAGVPIVLLNrpgrd----ttfsTVNADNdKGGRLAAECLLrnGHRKVINLTGpkk--hanLSRRSTAFIKTME 214 Terriglobus roseus
OKP23044  131 dtvikqiHAVPVVAIAfdigdvmslcggtEFNLHNeTGGYIAGRFLLskGHKKIACVTGpka--lktTTNRIAGLKKALG 208 Serratia liquefaciens
OUS78514  154 qlhfrknHTVPVVLFNpspah----tslpVIQTDNyLDGLIAMRHLLelGHARIGHLSLnrd--asvWMDRFRAYKDSLL 227 Paenibacillus sp. ...
Feature 1                      #                                                      #       
SDN68144  205 EAGldt--pqtRIRHCGFg-yTAGREAAAAVLSrsseTTAVFAANDRLAMGTLAAASALGRrvPEELSVVGYNDTPVaaq 281 Actinomyces rumini...
KUO07356  202 EVGvtl--gdeAVLSAPGatpEAGYAAALLALAaperPTCVLTSTDAIALGVTEAFRHHGLrvPEDISVVGIDDIPQaah 279 Streptomyces sp. D...
EFH84253  206 ERGvsi--dpeFIAGGASk-lELGKAAAYELLKrperPTAIFTTNDLMAIGVLSAAWDLGIrvPEELSIVGIDDINLary 282 Ktedonobacter race...
OYU26253  207 RAGvel--padHIRFGHDt-iDDGRNAAHSLLAttpsITAVFATNDLPAFGVLQAAADLGLevPRDLSVVGVTDIQMahq 283 Burkholderiales ba...
OJU80865  212 TAGmeev-kteAPGSVTPt-fVEGRRLMSALLDaperPTGVYAPSDVMAVGALDAIASRGLrcPEDISVVGYNDLPVsrf 289 Solirubrobacterale...
SDE37098  212 TAGlgr---arTIRSDGNlsiDYGRRAANEIAQmpdrPTGVFVHNDEAAIGLLHEFSRLGIsvPGEISVVGYDDLSFast 288 Loktanella pyoseon...
SEE66830  216 DLPg------lPVEVATSt-iEGGRAAARSLLDvaspPTGIFFASDTMALGGLMACADLGLrvPDDVSVAGFDNVTVgql 288 Jiangella alba
SDF85618  215 AQRga----rvNTIHTINt-mQGGYEAAIEIFRnlngETAIATGNDAMAFGVMRAAIEAGVriPRDISLIGFDDVELsam 289 Terriglobus roseus
OKP23044  209 EFNlpe--davDYIEGNYt-yQSGVDAMYQLFSsaalPTAIICHNDLMAIGVQNAANELGLkiPRELSVMGYDDIEMskl 285 Serratia liquefaciens
OUS78514  228 ARGlpfrseyiRLIEKERv--KEAEQGAYQLLQveerPTAIFAANDILAVGVLQAAHRLGIrvPDELSIIGVDGIELaqy 305 Paenibacillus sp. ...
Feature 1              #                                          
SDN68144  282 laVPLTTVHVPfDLIAVGALDLLAaqtag---tgeqpADRVAVPTLIPRRSA 330 Actinomyces ruminicola
KUO07356  280 ahPPLTTVGLPmRRMARDAAELLLnairdk--qpvppDLSLLSPAIIRRESS 329 Streptomyces sp. DSM 15324
EFH84253  283 tsPPLTTVRIDkYKLIHQALHTLQqaieh----qpivSTHVIKPELIIRHSV 330 Ktedonobacter racemifer DSM 44963
OYU26253  284 mrPALTTVAVPtEEAAALAVQLLLseitaq-pgdaapMQVAKAPRLVVRSST 334 Burkholderiales bacterium PBB2
OJU80865  290 iaPPLTTVEMPaEELGAEAARMALesiad---psrrgRVVTLPARLIVRRST 338 Solirubrobacterales bacterium 70-9
SDE37098  289 ttPGLTTVRHSrRKWGSMACDRLIdlieg---tntavDEQVIQPVLITREST 337 Loktanella pyoseonensis
SEE66830  289 pgIGLTTIDSDaARVGERATELLLerilapagattdpVLITRPAELVVRTST 340 Jiangella alba
SDF85618  290 tfPPLTTVRQPkYEVGRAAVEIVQqllss---gsktpIHRVVDVELVERSSV 338 Terriglobus roseus
OKP23044  286 sfPSLSTVRIPlDDMAYQALEGLTmkmsh----pgskAIISITPSLVVRGSV 333 Serratia liquefaciens
OUS78514  306 syPSLASVVHPrYSLGEQSVELLVqimsa----kkdlPSLIVKSQLHVREST 353 Paenibacillus sp. MY03

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap