Conserved Protein Domain Family
PBP1_LacI-like

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cd06277: PBP1_LacI-like 
ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Statistics
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PSSM-Id: 380500
Aligned: 14 rows
Threshold Bit Score: 349.231
Created: 26-Dec-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligandputative dimer
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the LacI family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           ##  #                                              #      
KPI48748   59 AIRLIVfkkhgy----vvsdtpFFSALIEGCERECrnngYELLISHvrddv-sskenIDTIIRQK-NVDGILLLatemne 132 [Clostridium] diff...
SCJ14551   67 KLIMLLcpvsnlgeedswnvslSFYEIMKEIEKSIneyhHYLFFKSvqiqe-dfqdkLKEIIETY-RIRGIIVLatdlts 144 uncultured Clostri...
EFW03113   57 TIRLIIiykdah----iigdtpFFSELIRGIENECslqgYELIIHHvnsds--lhteITKSLKSN-QTKGVLLLgtemdi 129 Coprobacillus sp. ...
KHM53204   54 RIKMVTyrdsge----vfnespFFSTLLDSIEAESrrsgYDVSIVNlyrhh-sdfedNVRELLND-TASAVLLVgtemse 127 Anaerovibrio lipol...
SCJ78181   58 LVRFIAyrnagel---verngdFIARVMEGVENAAh--qMGYDLLVrsatr--erlpEEIEACNGgDTDGVILLgtefap 130 uncultured Clostri...
ASB39718   54 RVKLVTyiengs----ivnespFFSLLISGVESECrrlgIDVVSCHlhred-pnydsYMGELLGD-PSCALLVLatemde 127 Clostridiales bact...
OUO59214   55 HVNFVLarkngl----vldegtFHPGVIEGVERAAslqdMSTVFTTieladrqaaarQAYEVTHD-SSSAIVLLgtemae 129 Olsenella sp. An270
YP_194339  62 SISLIIiqdrtgmmnrsyaslpFFDTLVSELSQNVsgagGQMQIVNldin---hlheGLNNEALQ-QSKASIVLatdlnq 137 Lactobacillus acid...
KYG87744   67 KLIMLLhltnsdsnveetedtfSFYEIMQKVEKEIhkyqYNLFYKSismvn-ddcteIEKIITFY-QIEGMLIVgnglls 144 Ruminococcus sp. D...
SHI04243   60 GLYLFRystigyg---sdkndgFVTSIIDAIGREArekdYSVSITAcheg---eflkELNMLDEN-PMEGIILLgselpl 132 Sporobacter termit...
Feature 1                       #            #                                   #            
KPI48748  133 edlrffenlsiSIPIVIVDsyhetkssdYVCINNvSGAYSAVKYFVekghKKIGYLGSsrsiknFEYRATGFDKAlndln 212 [Clostridium] diff...
SCJ14551  145 ke--mkmicdvPVPVVAIDryfrdisvdCVSFDNfAGACEAVRYLIglghTKIGYICSavdsenFKERRAGYEATlreng 222 uncultured Clostri...
EFW03113  130 dd--lklfdnvCTPLVVLDneyddmlydYVAINNsDGSYAITKLLIdnghKNIGLINSsyqinnFKKRKMGYRNAlddyn 207 Coprobacillus sp. ...
KHM53204  128 ed--arifqdaSIPLVMVDnyfeslkfdTVLMDNeDSVAKAVKYLLenghTKIGYLQGdtrirnFVARGRSFNRTlweng 205 Anaerovibrio lipol...
SCJ78181  131 dq--isllktlQVPCVVVDnalehtlfdAVVMDNaQGAYMAVDALRelghTRIGYLQSslgisnFNQRSRGYHQAmqalg 208 uncultured Clostri...
ASB39718  128 ke--aaklqaaAAPVVILDswyedlpfnAVLIDNaDAAYKAVSHLIemghTRIGHLRGrfqiknFYYRRQGYLRAmaehg 205 Clostridiales bact...
OUO59214  130 ed--ydlfrgsEVPLVVVDgwsdhlfldCIVTSNeNSAFRAVSYLIemghREIGYIAGsyriknFPLRERGYRRAmrean 207 Olsenella sp. An270
YP_194339 138 kq--vqlinrkLRNVIFVDnyfeyiqadFVSIDNfQGAYRAGKFIVkkgyRKIGYVASnhaisnFLQRRSGFRKAmrean 215 Lactobacillus acid...
KYG87744  145 kq--ikkianmNIPMVVVGqsfrqnnldCIAFDNyAGAYEAVTYLNelnhKRISYIKTegksksLEDREKGYDAAmsdld 222 Ruminococcus sp. D...
SHI04243  133 vy--enyfadrSTPVVIVDsqmpycpidSVALNNeYCVFLALKHLHslghRRVGLIHScletanSRERFQGFRNSvektg 210 Sporobacter termit...
Feature 1                   #                                                          #      
KPI48748  213 ieqnqeykFLLEPTI----DGAYNDMKKIIDekv--elPTALFAfNDIIALGAMKAMNEKgikiPEDVSIIGFDDItfsa 286 [Clostridium] diff...
SCJ14551  223 i--epekaYMIRVDNn--gQEIETCLMEELGrra--klPTAFFTeSDTLAVETIKCLQQLkidvPGEVSVVGFDNIvvan 296 uncultured Clostri...
EFW03113  208 lpfrpeneILVDPSPegsyRDTATYLKAFLNelsldelPTAFYAvNDNIAIGAVRAFQEL----NIDISICGFDDLpisk 283 Coprobacillus sp. ...
KHM53204  206 f--tvdknLVFNVKPn--vVGAFEGLNRYIAegr--emPTAFFAdNDMIALGAMQALQKNgfsiPEDVSIIGFDDItlge 279 Anaerovibrio lipol...
SCJ78181  209 lveypgdiLALRPTL----EGAYADASALLAtre-grlPGAFFAdNDTIALGALRAFKAAgyriPQDISIIGFDNIaacq 283 uncultured Clostri...
ASB39718  206 ltvdpactLTLSTGM----ETSRADMAALLEkgp--kmPTAFFAdNDMIALGAMRALQQAgykvPGDVSLVGFDDLpfca 279 Clostridiales bact...
OUO59214  208 l--pvnpaFRVEVGTv--vNSAYESMREWLAtnp--tlPSAFFVeNDIMAFGCMRAMTEWgikiPEDVSMFGFDDLtyas 281 Olsenella sp. An270
YP_194339 216 i--qippeYVFSLNP----TELRGSLPALFRqkn--nwPEAIFCeDDYMALRLLNALTRQgikvPQDIAVMGFDDIsedt 287 Lactobacillus acid...
KYG87744  223 l-emnkrhFVWEKNG----LNQELIETIRLEg------PSAFLAeNDYLAVDVIKEFQQAgikvPEEMSVMGFDNIvvad 291 Ruminococcus sp. D...
SHI04243  211 lsadpnliFTVGPSM----DDCSQDIGTYISigr--plPTAFLAeSDALAIGCMKALRAYgyrvPEDISIIGFDDIpfsr 284 Sporobacter termit...
Feature 1               #                                      
KPI48748  287 lanPALTTIKVQtVEMGKIAVNRlidkinnqldlkLKIEVETELIERDS 335 [Clostridium] difficile
SCJ14551  297 lvtPELTTMSVPwSDLADLAVGRlidkmeeeqgrnLKMKIEVKLIERNS 345 uncultured Clostridium sp.
EFW03113  284 lfnPPLTTVQVDkKQLGKIAVSRlinkin-gdishLKILVATKIVERDS 331 Coprobacillus sp. 29_1
KHM53204  280 afsPGLTTISVDiKAMGRLAVRRlveqiqnrdeahSCTRLYNNLVIRGS 328 Anaerovibrio lipolyticus
SCJ78181  284 vaePPLSTVHIYkQRMGRFAVERlvqqirrptgeyTKLLVGAKLILRGS 332 uncultured Clostridium sp.
ASB39718  280 isdPPLTTVKVHnYEMGIAAVRRlseltsrggeysTKTQVTSTFVHRSS 328 Clostridiales bacterium KB18
OUO59214  282 isnPPLSTVRVPnREMGELAVRTlvermreprdytSVVHLSTTFVERQS 330 Olsenella sp. An270
YP_194339 288 mviPELTTIHVPiTQIVDQAINQlqckvadtdwlpQKCFISTKLIERES 336 Lactobacillus acidophilus NCFM
KYG87744  292 lvtPELTTMDISwERIAELSVKRlmekmkgenvgtLKIILSAELVERKS 340 Ruminococcus sp. DSM 100440
SHI04243  285 mvdPMLTTIRVPaEHMGKCAVNLlynrikdpstplTRQLVCGELILRGS 333 Sporobacter termitidis DSM 10068

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