Conserved Protein Domain Family
PBP1_LacI-like

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cd06273: PBP1_LacI-like 
ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Statistics
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PSSM-Id: 380497
Aligned: 49 rows
Threshold Bit Score: 307.899
Created: 2-Oct-2006
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligandputative dimer
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the LacI family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 ##  #                                            #                  
CAJ48087   72 TVGAVYPTLNNpIYAHSTHSMQQTLwemGYQLLIASHEYHiddEAAVLRATVERGVDGIIMVGtdhseevfalLHQRSLP 151 Bordetella avium 197N
SHG85075   69 FVGALVPTLDNaIFASFLSALESTLaaqGLSLVVSTTGEDpqlEVDKARSLINIGAEGLILSGvahapelfdlIESTSFP 148 Thalassobius sp. G...
SFR06352   65 TVATIIPTIEHsVFAKFITAIEQTLaarGYNLVLAISNAEltrEMAAAEQLVAMGAEAFILTGathsgelldmLERRSIP 144 Poseidonocella sed...
SCB55164   75 LIGLIVPTLDAaIFTRMLEGLESRLapaGASLVYSATGYDldrEIRVVRNLIEKGVDGIILVGshhrketlklLREHKVR 154 Bradyrhizobium sp....
KTT55638   82 IVGAIIPTLDDeIFAAQIAGLQATLtqqGLTLFLGCSNYDpalALEEARAMLARGVEALALVGedhppelfeaLHRQRLP 161 Pseudomonas psychr...
PBB89383   78 IVGAAIPTLDYaIFAKMINHFQDSFaqhGYMTIVATTGFEhanVFEKVKTLVDRGAEALLLVGaiedpalvsyLKQPHIP 157 Mesorhizobium sp. ...
KQP05128   57 MVGAVFPTMDYgLYARMVSSFQRRMsgyGYLSVLLTVGFDnsrVFEPVRQLVDRGVEGLVMVGriddaklmsyLIDKHVP 136 Pseudorhodoferax s...
KQD67979   70 VIGAIIPTLDHsIYATMINAFQKKLseqGYVVYILTCGFDasdIFDKVTLLLERGAEALLIVGeildknlekyLLKFKIP 149 Acinetobacter baum...
OWV87649   70 TIGTLLPRLDDpIFSEIAHGVQETLfanDYVGFLQTSGYDnsrIFDAVFRLLNRGAEGLLIFGriddekllafIKNNQVP 149 Rhizobium sp. R635
PBD20086   75 VIGTMLPKIDDpIFSIIGAGVQETLlarGYVGFMQTIGFDnrdLFDHAMSMIEKGAEGLIVVGqvqderlltyCQEFSFP 154 Yangia sp. SAOS 153D
Feature 1         #            #                                    #                        #
CAJ48087  152 YVLTWsvddsnyphCVGISNyTAAYDLARCVLarGHTRVGICGGpierNERARGRRNGVLGAlreqglsvpaeWINEQPF 231 Bordetella avium 197N
SHG85075  149 TLATSffdpegplpTIGYDNiDAAEMGIQYLKdqGHRKVAVVHGpvasNDRTRARIEGARSVtgv------siEFHEVPL 222 Thalassobius sp. G...
SFR06352  145 VVFTSifdgasavpTIGYDNtALATAAIEYLHgnGHRTIAVAHGptaeSDRTAARCRGVLLAssde----ietPLVEVAL 220 Poseidonocella sed...
SCB55164  155 FAVTYalsedasipCMGFDNrSGGALAANYLAdlGHKTLAVIAGvtrdNDRASGRLEGFLAMaerrgidrsriVVVESPY 234 Bradyrhizobium sp....
KTT55638  162 YVVTYawraesphpCIGFDNqAAFARLTQHLLdlGHRRFGVIHQplahNDRVQARLAGIRETlasvgidlpatAVHEGPA 241 Pseudomonas psychr...
PBB89383  158 VVTTYsylpdeivpCIGFDNyAATQSAMEYLAdlGHRNFAMIAGspkgSDRQRARIAAYKDFvgsrn-lhgaaNIIIRNF 236 Mesorhizobium sp. ...
KQP05128  137 TVCTYsalthtpfpSIGYDNyVATEKVMQHLLglGHRAFAMFSGpvkgNDRQQARRRAFTDAlerag-ipgepRIYEDTH 215 Pseudorhodoferax s...
KQD67979  150 TICTYsyhhdskfpFIGFDNyASTTTIVEYLYslGHKEIAMICGplkgNDRQIARVESFKNFmtskq-aehsvWECKNQY 228 Acinetobacter baum...
OWV87649  150 IIQIYsylegnpipSVGIDNyASTQKIAQLMLqlGHRDIAHISGptkgNDRQQARRKAYEDMmqang-lkttaQMVQPGY 228 Rhizobium sp. R635
PBD20086  155 IVSVYsytesgalpSVGFDNyEAARQLLDMLAqfGHRKICMIAGttdgNDRQARRVDAYNAFmaelg-eepivETLDMTR 233 Yangia sp. SAOS 153D
Feature 1                                                            #                #       
CAJ48087  232 SF--EGGRQAIREYWSrpeRPSVIFFGTDLLAMGALHECRRLGIAVPEQLSIVGFDGIdegemmqPELTTVSIPAQEIGR 309 Bordetella avium 197N
SHG85075  223 SF--EGAARALDQILSqteRPTAIACMSDVLAIGVLQKLQRLGMAVPGTFSLLGMDDLpiaahtfPPLSTVHLPVKRMGT 300 Thalassobius sp. G...
SFR06352  221 SV--EGGREAARRILEmspRPSAILCLSDVLALGVMFQLQSMGLTIPDDISIMGFDNLdwskdshPSLTTIDLPATRMGD 298 Poseidonocella sed...
SCB55164  235 EF--SRGRAAARLILNqnrNVTAIFCGSDVLAVGALRGCKDAGLCVPQDMSIIGFDNLdiaeyltPGLTTVDVPARLMGE 312 Bradyrhizobium sp....
KTT55638  242 TI--DAGIVGTQALLAaesPPTALICGNDRLALGALFAAQHLGVDVPRQLSITGFDDLelvshlqPALTTLRIDNRAIGV 319 Pseudomonas psychr...
PBB89383  237 TI--RDGTEAIRAILDkypETTAVVCNTDVMAFGALSESRRLGIRVPQDISIVGFDDAeyaaqlePPLTTIAVPAEEMGR 314 Mesorhizobium sp. ...
KQP05128  216 GYslDYAIRSFRAMREshpEVTAVVCNSDAYGLAVMGEARRMGLRVPQDISITGFDNDdfaplsdPPLTTISTAADRMGE 295 Pseudorhodoferax s...
KQD67979  229 NI--ASGKEILKEIVIsnpNVSAIICNSDVIAFGVLAGAKELGIKIPEQLNVIGYDNLefaeyltPPLTTLNIPAEEMGI 306 Acinetobacter baum...
OWV87649  229 TI--NDAGQAFRRILEenpNVTAVICATDLLACGVLAECRKLGISVPNEMSVSGFEDVafasllyQPLTTLAVPSGDMGR 306 Rhizobium sp. R635
PBD20086  234 DY--ATGASALRRILSrrpDVTAVLCNRDEIAFSVLAECRRRRIRVPEDLSVTGFDDLehaalfnPSVTTAAVPARKMAE 311 Yangia sp. SAOS 153D
Feature 1                                   
CAJ48087  310 RAARHIVDLIedrepaSSGPLPHTVLERGS 339 Bordetella avium 197N
SHG85075  301 AAGMAIAQWLengtvpKAHRLEPRMVVRES 330 Thalassobius sp. GSW-6
SFR06352  299 VAARQVVDRLetsapmTSTRLPARIVERES 328 Poseidonocella sedimentorum
SCB55164  313 EAANYFLADQnsldihSRVELETRLIVRES 342 Bradyrhizobium sp. err11
KTT55638  320 AAAEALLRARagd-plVSCELQPEFKLRGT 348 Pseudomonas psychrotolerans
PBB89383  315 LAAEMLHNSLssgeppRFVRLDSHLIVRKS 344 Mesorhizobium sp. WSM3864
KQP05128  296 LAAEALFGVLdsgrpvEDVVLPSELVIRGS 325 Pseudorhodoferax sp. Leaf265
KQD67979  307 LSAKAVLDNLnnqqplKSYLLKTELIVRES 336 Acinetobacter baumannii
OWV87649  307 YAARAMIANLeegqklTSMQFETSLIMRDS 336 Rhizobium sp. R635
PBD20086  312 HAAEAIMNLLdsgsaiESARYETEVILRES 341 Yangia sp. SAOS 153D

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