3CDX,2QJ8,3NA6


Conserved Protein Domain Family
M14_ASTE_ASPA-like

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cd06252: M14_ASTE_ASPA-like 
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Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup
A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Statistics
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PSSM-Id: 349470
Aligned: 31 rows
Threshold Bit Score: 259.425
Created: 10-Dec-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteactive site
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:[H] [ED] [H]Click to see conserved feature residue pattern help
Evidence:
  • Comment:Metallocarboxypeptidases share the zinc binding motif HXXE...H, where the zinc ion is penta-coordinated to ND1 atoms of the histidines, OE1 and OE2 atoms of the glutamic acid, and to a water molecule in a slightly distorted tetrahedral manner.
  • Comment:This structure has a calcium ion in the zinc binding site.
  • Structure:3CDX: Rhodobacter sphaeroides aspartoacylase bound to calcium; contacts at 3.5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                #  #                                 
3CDX_A     20 DGRQAGYAraPLSRNNSGWGtveIPITVVKNGsGPTVLLTGGVHGDEYEGQIAISDLARRLRPeevqGRVIMLPaVNMPA 99  Rhodobacter sphaer...
NP_770615  14 DQKWSGHLgiPFSIDRSPYFqlkIPIFRIKNGaGPKLLLMAGNHGDEYEGEITLTRLYRRLDAkavkGEITILPfANLPA 93  Bradyrhizobium jap...
PCH74142   19 PGRQVGDLmvRWSDNSNPLGyhpVPVISIRGDeGPVVLILGGTHGDEFEGPAAIMRLAQSLRPedlrGQVILIPaLNMAA 98  Rhodobacteraceae b...
KIC09600   19 EGKHTGYVriQFSSDRSAYGwqpVPIMSIKNGdGPVAVVVGANHGDEYEGVSVTTGLFRDLNVedvkGQIIFLPaLNAPA 98  Leisingera sp. ANG-M1
OED37541   19 PGRHTGDAmlRWSDNSNPLGyhpVPVISLKGGeGPVLLLTGATHGDEFEGPSAIMRLVHGLDPvrlqGQIIAIPaLNMPA 98  Chromatiales bacte...
KPL51941   12 PGKRIGHIelVWSDDAHAYGvipVPIVAIVGGsGPTALVTAGVHGDEYEGLVIARSLAARLEPgdlaGRLIVMPaLNWPA 91  Prosthecomicrobium...
KEO60748   17 RGKRTGFFgiAHSDNRLAFStiqSPLAVISNGdGPTVLVCGGNHGDEYEGQIIARRLYETLSPdalsGRLILAPaLNMPA 96  Thioclava sp. DT23-4
OUU37795   18 KGKHYGAAhlDYSNDEGVSRvfpIPIVSITNGdGPTVLLTAGNHGNEDEGQLILRRLIADISPgdirGRIIALPaLNYPA 97  Proteobacteria bac...
OUX99669   16 PGRHIGSLdlMTSDNTHYYSvipIPIAVFNNGeGPTVYVSAGTHGNEEQGQLVVRRLIADLNLsdiqGRLILIPsLNLPA 95  Hyphomonadaceae ba...
ARP75773    2 SRVSRADFscAAATNRSAYRrvtVPVRRIEAGaGPSVLLMAGVHGDEWEGQAALLELWHALPGllrrGTVYVAPaANAEA 81  Bordetella sp. AU3139
Feature 1                                                         #                           
3CDX_A    100 IQsdTRLSPVD---GRDINRCFPGdprGTFSQMLAHFLDSVILPmaDISVDMHTAGHSYDSTPSTNMHYLadpALRARTL 176 Rhodobacter sphaer...
NP_770615  94 VMaaRRRSPLD---EGNLNRAFPGdaaGTPTFRLAHFLEHELFPrhDVVFDIHSGGTSMAHVPCALIERQgppEMFGQAL 170 Bradyrhizobium jap...
PCH74142   99 IAasSRVTPLD---GLNLNRAFPGdadGGPTQMIAHYVETVLMPrcAAVIDLHSGGKASFFQPCALATRTaddGLFGRNL 175 Rhodobacteraceae b...
KIC09600   99 FYagKRTSPLDesgEANLNRMFPGvqnGSPTQMICWWVVNRLLPkvDAVFDLHSAGKSIDHHPSVKIRLIgdpEKDALQM 178 Leisingera sp. ANG-M1
OED37541   99 LAssSRVTPLD---GANLNRAFPGsadGQPTAMLAHWLETEILPmcNAAIDFHSGGKASYFQPCTLPTHTadrSLAAQNM 175 Chromatiales bacte...
KPL51941   92 VEarARTSPID---RQNLNRAFPGg-sDGPTALIAAFVEGLLPEi-DIAIDLHSGGTQSSYTPCGYVYAMgsaEFRARKL 166 Prosthecomicrobium...
KEO60748   97 VQdaNRVSPLD---GGNLNRSFLGagfMGPTQDIAGFIATHLIPkaDLAVDIHSGGRQTNYVDTAYFCLSadvVQNQQTH 173 Thioclava sp. DT23-4
OUU37795   98 VRanTRTSPLD---GDNLNRCFPAstvAGPTHAIARFVVDALLPlaDAGVDLHAGGASAKYVNTTFLCTCedaTVFRKSF 174 Proteobacteria bac...
OUX99669   96 ARvsARVSPLD---DANLNRSFPGdarSGPTSTIAHFLTNVLFPicDAGMDLHSAGREAGMPALTYLGLNpdkELTKRSY 172 Hyphomonadaceae ba...
ARP75773   82 SLagTRLSPAD---GGNLNRAFLGapaRGYTEAVAHALQTRILPqvQYMIDVHSGGASLRYLPATVITRYgddPWDERVA 158 Bordetella sp. AU3139
Feature 1                                                                        
3CDX_A    177 AAAEAFGaPHNVVFGGvdeGSTFTSCVERrGIVSLGTELGgWGRVNiEGVRIGKRGILNVLKHMGVI 243 Rhodobacter sphaeroides 2.4.1
NP_770615 171 RLMEGLGmPFAFVAENgaaAPTSMAAAARaGAIGLSGEFGgGGTVTpQTMAFTARAVDRLLLALGIV 237 Bradyrhizobium japonicum USDA 110
PCH74142  176 GLARAFGlPLIWQLGAhndSRSVNSAAERaGVMMIAAELGgGGGTDpAITDLAETGLRRCLGYLGVL 242 Rhodobacteraceae bacterium
KIC09600  179 KFLELFGaPLGIVGDRv-tETTFSSATARrEIMYLSTELGgAGKIRpWIRDFAFNGTKRCLREMGIL 244 Leisingera sp. ANG-M1
OED37541  176 ELARVFGlPLIWRLGSnndNRSVNSAADRaGVPMIATELGgGGGVDpAITNATEQGVRNVLHFLGIL 242 Chromatiales bacterium (ex Bugu...
KPL51941  167 AAAHAFGaPVTAVVAAtasSGSLSGACERhGVPMVATELGgGARLDrAAQAIGEAGTLNLLRHAGVL 233 Prosthecomicrobium hirschii
KEO60748  174 ELAQVMGlPYTMVVPAgdaSGDFDSAAHAaGCAMISCELGgEGKVTrLALERGWHAVLRLLAHQGVL 240 Thioclava sp. DT23-4
OUU37795  175 DLAKAFNaPYMYVVDGrgsPTGFDPAAHAaDVPFISTELG-GGWIDqEALEVGYQGVRNVLAYLGII 240 Proteobacteria bacterium TMED51
OUX99669  173 ELLKAFGfPHAMICEDg-gDGMDDSAHAL-KIPFIGAEFKgMSSADpAPLKQGMDAVLRFLVHTGVL 237 Hyphomonadaceae bacterium TMED5
ARP75773  159 RLARGFGlPRCLFFRGv-eAGSMPAAASRlGVARLSAEIGgGAETSrELAQLCRDGMLSCLAGLDMV 224 Bordetella sp. AU3139

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