2XZM,3KBG,3IZ6,3IZB


Conserved Protein Domain Family
KOW_RPS4

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cd06087: KOW_RPS4 
Click on image for an interactive view with Cn3D
KOW motif of Ribosomal Protein S4 (RPS4)
RPS4 plays a critical role in the core assembly of the small ribosomal subunit with a KOW motif at its C-terminal. RPS4 also acts as a general transcription antiterminator factor and regulates ribosomal RNA expression level. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. RPS4 deficiency in human has been associated with Turner syndrome. Archeae RPS4 (RPS4e) showed substantial identity to the eukaryotic equivalents RPS4, but the archaeal proteins formed a different complex from the eukaryotic proteins.
Statistics
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PSSM-Id: 240511
Aligned: 89 rows
Threshold Bit Score: 46.3547
Created: 6-Mar-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:2XZM; Tetrahymena thermophila Eukaryotic 40s Ribosomal Subunit, contacts 4.5A
  • Structure:3IZB; Saccharomyces cerevisiae 80S eukaryotic ribosome, contacts 4.5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   ###        # # ##    # ##           # #        
2XZM_W       177 LESGNVCYIQQGNNIGRVGIIQHIEKHQg---SFDICHVKdakgnAFATRLgNIFVLG 231 Tetrahymena thermophila
EIJ89100     175 LEVGKTAYAFRGKNLGCVGIIREIKVHIs---GFSISILEdlngrMYTTRTdNLMVIG 229 Nematocida parisii ERTm3
ACU00732      75 FETDKVVYVIKGEDMGRVCVIKHIKEVDy---SDSIITVEdfakkVFTIPSkNLIVIG 129 Nosema bombycis
XP_001713181 175 FSIGSLCVVIKGSNIGRIGVFINTIGGQg---SDSIVCLKdfngsSFSTQTkNLFVIG 229 Guillardia theta
Q9UX94       173 ISERSYAIFVGGRNVGIHGIVKNINLSKfksrKYSVITLEsrdgnTYQTNImNVMSIG 230 Sulfolobus solfataricus P2
P62429       175 LEKDRKAYIIRGKHTGRIGVIKEVIKTDm--pWPNIVRLEva-geVGETWLdNIIPVP 229 Nanoarchaeum equitans Kin4-M
Q40941       175 FEVGSLCLITRGKHLGTIAVIKEIRKTKs---LRKMIHLEkidgkKLTKKCsDLLVIG 229 Bigelowiella natans
A8MB20       173 MQPNQYVIAFNGVNVGRHGTLINWVRSFr--kRDAIATVKak-dsEFRTVLnYLLVIG 227 Caldivirga maquilingensis IC-167
AFP65586     175 FDVGSLCLITGGNNIGRIGIVMQQEKNSg---PAEMIRLKdsegfEFFSKMsYIFVIG 229 Chroomonas mesostigmatica CCMP1168
YP_003815664 184 FKEGSLALVVWGRNMGKLGKIVSVTRGWg--wDRSVASLQdsagnSFETSLsNIYVVG 239 Acidilobus saccharovorans 345-15

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