2DO3


Conserved Protein Domain Family
KOW_Spt5_3

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cd06083: KOW_Spt5_3 
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KOW domain of Spt5, repeat 3
Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at its C-terminus. Spt5 is involved in transcription elongation and termination. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. KOW_Spt5 domains play critical roles in recruitment of multiple other eukaryotic transcription elongation and RNA biogenesis factors and additionally are involved in the binding of the eukaryotic Spt5 proteins to RNA polymerases.
Statistics
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PSSM-Id: 240507
Aligned: 54 rows
Threshold Bit Score: 57.5353
Created: 12-Mar-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DO3_A         17 YFKMGDHVKVIAGrFEGDTGLIVRVEenFVILFSDlt--mhELKVLprDLQLC 67   human
XP_001891293  233 HLKVGDEVRILLGdHQGVTGWVVNQDddYVEVSPGn----vEFFSSpfVFATE 281  Laccaria bicolor S238N-H82
XP_001882302   16 DLKVGDKVRILSGdHEGVTGWVVNGDndYVCVFNDrt--stEIEVSpgIVQFF 66   Laccaria bicolor S238N-H82
CAL53615      369 ALQTGSTVRVLHGkHEGVVGMVVKVDrdVAHIFSTvs--neEFQVFnaRSRRH 419  Ostreococcus tauri
XP_813491     484 HFALGTHVIVSSGeRAGESGTVVKSSgdVLYIFSDratasrELTVCasDCHQS 536  Trypanosoma cruzi strain CL Brener
XP_951679     479 HFTEGTHVVIDGGvHAGESGTVVKALgdVVHVFSDratatrELVVRadDCHRS 531  Trypanosoma brucei TREU927
NP_013703     583 IFEPGDHVTVINGeHQGDAGLVLMVEqgQVTFMSTqt--srEVTITanNLSKS 633  Saccharomyces cerevisiae S288c
EFW95366      484 IFLPGDHVTVIYGvHSNESGLIVKVEenQVTLVSDqt--kkDITVFpnYLMKS 534  Pichia angusta DL-1
XP_002493383  533 IFNVGDHVRVIHGkHTDDTGLIVEVNgdKVEFISNqt--krTVIVFsnYLIKS 583  Pichia pastoris GS115
CCH40836      494 IFSTGDHISVLRGkHNGHTGIVVSVQedHVTFISDqs--hkDVTVFanHLTKS 544  Wickerhamomyces ciferrii
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