Conserved Protein Domain Family
KOW_Spt5_1

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cd06081: KOW_Spt5_1 
KOW domain of Spt5, repeat 1
Spt5, an eukaryotic ortholog of NusG, contains multiple KOW motifs at its C-terminus. Spt5 is involved in transcription elongation and termination. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. KOW_Spt5 domains play critical roles in recruitment of multiple other eukaryotic transcription elongation and RNA biogenesis factors and additionally are involved in the binding of the eukaryotic Spt5 proteins to RNA polymerases.
Statistics
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PSSM-Id: 240505
Aligned: 56 rows
Threshold Bit Score: 47.0782
Created: 14-Mar-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2065177       276 KSWVRLKRGIYKDDIAQVDYVEpsQNTISLKMIPRIDY 313  human
Q4WP96        340 GGWVRIKRGKYQGDLAQIEEVDtnGLDVTVRLVPRLDY 377  Aspergillus fumigatus Af293
XP_955504     269 GEFVRVKFGRYAGDLGQVYESDenTSTVTLKLIPRIDP 306  Theileria annulata strain Ankara
CAD98281      307 ESWVRVRSGIYGGDLAQIYEVDehEANVILRLVPRLDV 344  Cryptosporidium parvum
XP_001611155  255 GEYVRIKTGRYAGDLAQVHESDelNGTVVVKVIPRLQE 292  Babesia bovis T2Bo
XP_001580870  130 QAYARLHYPPYENDVCEILDVRedLKEAYIRVIPRVDI 167  Trichomonas vaginalis G3
XP_001690057  268 DTWVRVRSGLYKDDLARVVEVDsvAGRAVVKLLHRLDF 305  Chlamydomonas reinhardtii
CCF76115      280 DEYVRVRTGLYKGDLGQVFEVDvnNGRVTLRLIPRLDM 317  Babesia microti strain RI
EEE34645      294 NDFVRVKRGLYANDIAQIHQVEeqGMVVTVRLIPRLDL 331  Toxoplasma gondii VEG
GAB67440      331 NEYVRIKRGVYMNDIGQIFEVHekGIYAIVRLIPRIQY 368  Plasmodium cynomolgi strain B
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