5CIU,3LLR


Conserved Protein Domain Family
PWWP_DNMT3

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cd05835: PWWP_DNMT3 
Click on image for an interactive view with Cn3D
PWWP domain found in the DNA (cytosine-5)-methyltransferase 3 (DNMT3) family
The DNMT3 family includes DNMT3A and DNMT3B, which are required for genome-wide de novo methylation and is essential for the establishment of DNA methylation patterns during development. DNMT3A, also called DNA methyltransferase HsaIIIA, DNA MTase HsaIIIA, or M.HsaIIIA, modifies DNA in a non-processive manner and also methylates non-CpG sites. It may preferentially methylate DNA linker between 2 nucleosomal cores and is inhibited by histone H1. DNMT3A is recruited to trimethylated 'Lys-36' of histone H3 (H3K36me3) sites. DNMT3B, also called DNA methyltransferase HsaIIIB, DNA MTase HsaIIIB, or M.HsaIIIB, may preferentially methylate nucleosomal DNA within the nucleosome core region. DNMT3B may function as a transcriptional co-repressor by associating with CBX4 and independently of DNA methylation. Members of this family contains a PWWP domain that is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by DNMT3B is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of DNMT3B has been identified in patients with ICF (immunodeficiency, centromeric instability, and facial anomalie) syndrome , a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA.
Statistics
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PSSM-Id: 438960
Aligned: 56 rows
Threshold Bit Score: 78.4557
Created: 27-Nov-2007
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
methyl-histonePWWP sequence
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:methyl-histone binding site [polypeptide binding site]
Evidence:
  • Structure:5CIU; Homo sapiens DNMT3B in complex with H3k36me3, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                      #  #                        #  # ###                               
5CIU_A         19 GIGDLVWGKIk-gFSWWPAMVVSWkatsk-rqamsGMRWVQWFgDGKFSEVSa-dKLVALGLFsqhfnl---atfnklVS 92   human
XP_019618330   28 GVGDLVWGKQgvrSFWWPGEVVQGrn--------gNSLWVRWFgLNTFSPVSe-lKVHKFQSLkqhyds---eanktmQS 95   Belcher's lan...
XP_019640516 1834 QTGDMVWAREegrSLRWPGRVVSDgd-------rgDAMWVRWTgSGGYSKVKq-kKIAPFYQFdqyfdr---tayhnlPA 1902 Belcher's lan...
XP_019645104   33 TSGGLVWAQDagkTLWWPARIVSTvn-------gaSALWVRWYgSGLYSKVKa-kRARPFTKFqtlhdr---saylsiPL 101  Belcher's lan...
NP_001340321  433 FVGKLVWGCC---SGWWPALIIDAdhvgm--lseaGKSWVYWIgEARISLLSektQIEPFSYNlksrl-----tqnsnEA 502  buff-tailed b...
XP_019624287  410 SMGSLVWARQdqrTFWWPGEVVPGkd-------gdNSLWVRWLgINTFSPVDs-vEVDKFQSLdqhfsa---kahnslMS 478  Belcher's lan...
XP_017770102    5 KGYSVLWGKFg--RIFWPALVLPStlvhs--kandDNIWVFWFgDHTFSQVKk-aNIVNFEEYfkdktitffrqntkqSD 79   Nicrophorus v...
XP_025602103  279 NIGKLVWGFC---KGWWPAIIIETeavgi--atqeDKVCAFWLgDNLFSMLNektQIEPFSTNlngrlirhitdprasCA 353  coleseed sawfly
XP_025413690    8 DHGLIVWAKLskkTESWAGLIISVklmgflfeekpNKTWVWWLhHNTFSLVKn-dLIYNFFLDfefhs------knssGQ 80   yellow sugarc...
XP_024218476  158 IEGNLVWAKLtlkESYWPAIILKTettgf-sgcdeNQCYVFWLkDNRLSKVPk-kYIMDYASFvpklti----kknenVM 231  brown marmora...
Feature 1                         
5CIU_A         93 YRKAMYHALEKARVRA 108  human
XP_019618330   96 YREALKRVLEKKNSQR 111  Belcher's lancelet
XP_019640516 1903 YRKSVNDALRTMNMPL 1918 Belcher's lancelet
XP_019645104  102 YRRAVNEIFKDAETEA 117  Belcher's lancelet
NP_001340321  503 RMRVIDATMQMLRRLL 518  buff-tailed bumblebee
XP_019624287  479 YRASVDEAKRKYMKSA 494  Belcher's lancelet
XP_017770102   80 WLKAIYEAIKIYSKQR 95   Nicrophorus vespilloides
XP_025602103  354 RRKTSYYALKHLLRKN 369  coleseed sawfly
XP_025413690   81 RKNGILEALEILSVRY 96   yellow sugarcane aphid
XP_024218476  232 RTEAIYESIDLYIERK 247  brown marmorated stink bug

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