1S72


Conserved Protein Domain Family
Ribosomal_P0_L10e

?
cd05795: Ribosomal_P0_L10e 
Click on image for an interactive view with Cn3D
Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Statistics
?
PSSM-Id: 240221
Aligned: 36 rows
Threshold Bit Score: 189.322
Created: 7-Nov-2007
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
23S rRNAputative
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:23S rRNA interface [nucleic acid binding site]
Evidence:
  • Structure:1S72_G; Haloarcula marismortui L10 ribosomal protein interfaces with 23S rRNA at a kink-turn site, defined at 4A contacts.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1       ##  #                                           ####  #                       
1S72_G     14 EWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGT-AELRVSRNTLLERALDDVD--DGLEDLn---gYITG 87  Haloarcula marismo...
Q8TX50     19 EWKRREVKELKELMDEYENVGLVDLEGIPAPQLQEIRAKLRERdTIIRMSRNTLMRIALEEKL--DERPELeplldYIEG 96  Methanopyrus kandleri
O74109      6 EWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENgGLLRVSRNTLIELAIKKAAkeLGKPELeklveYIDR 85  Pyrococcus horikoshii
O27717      6 EWKKKEVQELHDLIKGYEVVGIANLADIPARQLQKMRQTLRDS-ALIRMSKKTLISLALEKAG--RELENVdslsdYMEG 82  Methanothermobacte...
Q8ZTT3     18 ARKVKIVSEATELLQKYPYVFLFDLHGLSSRILHEYRYRLRRY-GVIKIIKPTLFKIAFTKVY--GGIPAEia--eKVRG 92  Pyrobaculum aeroph...
Q8TI80     13 QWKKDEIENIKELIQSHKVFGMVGIEGILATKMQKIRRDLKDV-AVLKVSRNTLTERALNQLG--ETIPGMk---eYLDK 86  Methanosarcina ace...
O28781     10 EYKVRAVEEIKRMISSKPVVAIVSFRNVPAGQMQKIRREFRGK-AEIKVVKNTLLERALDALG--GDYLKLk---dYLGD 83  Archaeoglobus fulg...
P57692      6 QQKKELVNEITQRIKASRSVAIVDTAGIRTRQIQDIRGKNRGK-INLKVIKKTLLFKALENLG--DEKLSKlk--eNSGG 80  Thermoplasma acido...
Q6L1X8      6 QWKIDFVKNLENEINSRKVAAIVSIKGLRNNEFQKIRNSIRDK-ARIKVSRARLLRLAIENTG--KNNIVKlk--dYAHG 80  Picrophilus torridus
P54049     11 PWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDK-VKLRMSRNTLIIRALKEAAeeLNNPKLaelanYVER 89  Methanocaldococcus...
Feature 1                                                                                     
1S72_G     88 QVGLIGTDdNPFSLFQELEASKTPaPIGAGEVAPNDIVIPEGDTGVDPGPFVgELQSVGADARIQEGSIQVLSDSTVLDT 167 Haloarcula marismo...
Q8TX50     97 PVAFIFTNlDPFKLYKLLEESKASaPAKPGDIAPEDIVVPEGPTPFEPGPIVsELQQAGLPAQIQDGKVVITKDTVLVKE 176 Methanopyrus kandleri
O74109     86 GAGILVTNmNPFKLYKFLQQNRQPaPAKPGAVVPKDVVVPAGPTPLAPGPIVgQMQALGIPARIEKGKVTIQKDTTVLKA 165 Pyrococcus horikoshii
O27717     83 QPALIFTDmNPFKLFKILEDSKTPaPAKPGAIAPDDIVVPKGDTGFAPGPILgELQQIGIPAKIEKGKIVVSNDHVVVKA 162 Methanothermobacte...
Q8ZTT3     93 EVGFFFTSfNPAEVIKIVAENSVRrAAQPGDKAPFDIVVPAGPTNASPGPIIsKFGKLKIPTRVQEGKIWIAKDTVVAKA 172 Pyrobaculum aeroph...
Q8TI80     87 QTALIFTNeSPFKLYKLLEQTKTPsPIRGGAIAPADITVQKGPTSFPPGPILgELQSAGIPASIDAGKVAVKETKVVCKA 166 Methanosarcina ace...
O28781     84 QIAIITADeNPFRLFRMIEDTKVPsPLKPNQVSPVDVVVNEGPTPIPPGPLMaELQMAGLPVAIEKGKVVVKATTTVVKA 163 Archaeoglobus fulg...
P57692     81 QIALLTSDlEPTEIYKIIESTFQKtAPRGGEIAPEDIVIQPMTTGFPPGPMMtEFQKVGLQTGVEKGKIAIKKETVFVKK 160 Thermoplasma acido...
Q6L1X8     81 QVALITTDeSPKKIYDILEKSKTKaPAKGGEIAEEDIVIEPKETNFPPGPKIsEFQKAGLPAAIEKGKIVIKSEVTFVKK 160 Picrophilus torridus
P54049     90 GAAILVTDmNPFKLYKLLEENKSPaPVRGGQIAPCDIKVEKGSTGMPPGPFLgELKSVGIPAAIEKGKIAIKEDKVVVKK 169 Methanocaldococcus...
Feature 1                        
1S72_G    168 GEEVSQELSNVLNELGIEP 186 Haloarcula marismortui
Q8TX50    177 GEEIDEKTAEILKKLEIEP 195 Methanopyrus kandleri
O74109    166 GEVITPELANILNALGIQP 184 Pyrococcus horikoshii
O27717    163 GEEIPPKVAGILTRLDIQP 181 Methanothermobacter thermautotrophicus str. Delta H
Q8ZTT3    173 GQEITPEMAEVLRVVGIEP 191 Pyrobaculum aerophilum
Q8TI80    167 GEVVPQKLATMLSKLEIYP 185 Methanosarcina acetivorans
O28781    164 GEVVRPEVARALERLDIKP 182 Archaeoglobus fulgidus
P57692    161 GETIPKDKAKILEMLEIKP 179 Thermoplasma acidophilum
Q6L1X8    161 GDVITREKALVLKDLEIYP 179 Picrophilus torridus
P54049    170 GEVVSPKLAAVLDRLGIKP 188 Methanocaldococcus jannaschii

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap